Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.25■■□□□ 1.95
LRCH3Q96II8 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
LRCH3Q96II8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
LRCH3Q96II8 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.25■■□□□ 1.95
LRCH3Q96II8 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
LRCH3Q96II8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
LRCH3Q96II8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
LRCH3Q96II8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
LRCH3Q96II8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.24■■□□□ 1.95
LRCH3Q96II8 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
LRCH3Q96II8 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
LRCH3Q96II8 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.22■■□□□ 1.95
LRCH3Q96II8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
LRCH3Q96II8 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
LRCH3Q96II8 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
LRCH3Q96II8 Z92544.1-202ENST00000571933 1220 ntBASIC27.2■■□□□ 1.94
LRCH3Q96II8 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRCH3Q96II8 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
LRCH3Q96II8 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRCH3Q96II8 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.19■■□□□ 1.94
LRCH3Q96II8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.19■■□□□ 1.94
LRCH3Q96II8 AC018755.3-202ENST00000596210 929 ntBASIC27.19■■□□□ 1.94
LRCH3Q96II8 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRCH3Q96II8 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRCH3Q96II8 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRCH3Q96II8 AL161658.1-201ENST00000623641 1967 ntBASIC27.18■■□□□ 1.94
LRCH3Q96II8 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC27.18■■□□□ 1.94
LRCH3Q96II8 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
LRCH3Q96II8 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
LRCH3Q96II8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.18■■□□□ 1.94
LRCH3Q96II8 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
LRCH3Q96II8 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
LRCH3Q96II8 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.16■■□□□ 1.94
LRCH3Q96II8 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.16■■□□□ 1.94
LRCH3Q96II8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
LRCH3Q96II8 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
LRCH3Q96II8 AC120057.4-201ENST00000624722 1615 ntBASIC27.15■■□□□ 1.94
LRCH3Q96II8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
LRCH3Q96II8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
LRCH3Q96II8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.14■■□□□ 1.94
LRCH3Q96II8 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
LRCH3Q96II8 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
LRCH3Q96II8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.13■■□□□ 1.93
LRCH3Q96II8 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.13■■□□□ 1.93
LRCH3Q96II8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.13■■□□□ 1.93
LRCH3Q96II8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.13■■□□□ 1.93
LRCH3Q96II8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
LRCH3Q96II8 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
LRCH3Q96II8 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
LRCH3Q96II8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.12■■□□□ 1.93
LRCH3Q96II8 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.11■■□□□ 1.93
LRCH3Q96II8 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
LRCH3Q96II8 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.1■■□□□ 1.93
LRCH3Q96II8 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
LRCH3Q96II8 UNC93B8-201ENST00000511903 705 ntBASIC27.1■■□□□ 1.93
LRCH3Q96II8 RARRES2P6-201ENST00000567333 442 ntBASIC27.1■■□□□ 1.93
LRCH3Q96II8 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
LRCH3Q96II8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC27.09■■□□□ 1.93
LRCH3Q96II8 AC005837.3-201ENST00000612163 286 ntBASIC27.09■■□□□ 1.93
LRCH3Q96II8 AL359258.2-201ENST00000564063 1566 ntBASIC27.09■■□□□ 1.93
LRCH3Q96II8 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
LRCH3Q96II8 LONRF2P2-201ENST00000439212 571 ntBASIC27.08■■□□□ 1.93
LRCH3Q96II8 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.08■■□□□ 1.93
LRCH3Q96II8 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
LRCH3Q96II8 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
LRCH3Q96II8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.07■■□□□ 1.92
LRCH3Q96II8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.07■■□□□ 1.92
LRCH3Q96II8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.07■■□□□ 1.92
LRCH3Q96II8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC27.07■■□□□ 1.92
LRCH3Q96II8 KRT16P3-201ENST00000439127 1283 ntBASIC27.07■■□□□ 1.92
LRCH3Q96II8 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
LRCH3Q96II8 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.06■■□□□ 1.92
LRCH3Q96II8 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC27.06■■□□□ 1.92
LRCH3Q96II8 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
LRCH3Q96II8 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
LRCH3Q96II8 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.05■■□□□ 1.92
LRCH3Q96II8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
LRCH3Q96II8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
LRCH3Q96II8 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
LRCH3Q96II8 MIR4787-201ENST00000607364 84 ntBASIC27.05■■□□□ 1.92
LRCH3Q96II8 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
LRCH3Q96II8 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
LRCH3Q96II8 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
LRCH3Q96II8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
LRCH3Q96II8 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.04■■□□□ 1.92
LRCH3Q96II8 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
LRCH3Q96II8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.04■■□□□ 1.92
LRCH3Q96II8 AC110285.6-201ENST00000617652 491 ntBASIC27.04■■□□□ 1.92
LRCH3Q96II8 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.04■■□□□ 1.92
LRCH3Q96II8 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
LRCH3Q96II8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.03■■□□□ 1.92
LRCH3Q96II8 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.03■■□□□ 1.92
LRCH3Q96II8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC27.03■■□□□ 1.92
LRCH3Q96II8 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
LRCH3Q96II8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.02■■□□□ 1.92
LRCH3Q96II8 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.02■■□□□ 1.92
LRCH3Q96II8 KRT125P-201ENST00000546827 989 ntBASIC27.02■■□□□ 1.92
LRCH3Q96II8 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
LRCH3Q96II8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
LRCH3Q96II8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms