Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD3Q96EY7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD3Q96EY7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD3Q96EY7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCD3Q96EY7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD3Q96EY7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCD3Q96EY7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD3Q96EY7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD3Q96EY7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD3Q96EY7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
PTCD3Q96EY7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
PTCD3Q96EY7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD3Q96EY7 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.44■■□□□ 1.5
PTCD3Q96EY7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD3Q96EY7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PTCD3Q96EY7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCD3Q96EY7 DUSP8P4-201ENST00000399538 1761 ntBASIC24.42■■□□□ 1.5
PTCD3Q96EY7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.42■■□□□ 1.5
PTCD3Q96EY7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.42■■□□□ 1.5
PTCD3Q96EY7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PTCD3Q96EY7 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCD3Q96EY7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
PTCD3Q96EY7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.41■■□□□ 1.5
PTCD3Q96EY7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCD3Q96EY7 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PTCD3Q96EY7 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCD3Q96EY7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
PTCD3Q96EY7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.39■■□□□ 1.49
PTCD3Q96EY7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTCD3Q96EY7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
PTCD3Q96EY7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PTCD3Q96EY7 LINC01971-201ENST00000617888 1048 ntBASIC24.38■■□□□ 1.49
PTCD3Q96EY7 AC110285.7-201ENST00000624417 1536 ntBASIC24.38■■□□□ 1.49
PTCD3Q96EY7 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PTCD3Q96EY7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PTCD3Q96EY7 AC018358.1-201ENST00000631079 1402 ntBASIC24.37■■□□□ 1.49
PTCD3Q96EY7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.37■■□□□ 1.49
PTCD3Q96EY7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.37■■□□□ 1.49
PTCD3Q96EY7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.36■■□□□ 1.49
PTCD3Q96EY7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTCD3Q96EY7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD3Q96EY7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD3Q96EY7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD3Q96EY7 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD3Q96EY7 AC092803.2-201ENST00000564287 1899 ntBASIC24.33■■□□□ 1.49
PTCD3Q96EY7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.33■■□□□ 1.49
PTCD3Q96EY7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.32■■□□□ 1.48
PTCD3Q96EY7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCD3Q96EY7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD3Q96EY7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD3Q96EY7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 ZNRF2P2-203ENST00000454624 420 ntBASIC24.3■■□□□ 1.48
PTCD3Q96EY7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.3■■□□□ 1.48
PTCD3Q96EY7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 350.3 ms