Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 PVT1_1.1-201ENST00000615125 194 ntBASIC25.75■■□□□ 1.71
SLC44A3Q8N4M1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
SLC44A3Q8N4M1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
SLC44A3Q8N4M1 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
SLC44A3Q8N4M1 MIR3960-201ENST00000583311 91 ntBASIC25.74■■□□□ 1.71
SLC44A3Q8N4M1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.74■■□□□ 1.71
SLC44A3Q8N4M1 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.73■■□□□ 1.71
SLC44A3Q8N4M1 AC019069.1-201ENST00000610008 1333 ntBASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 AC131212.1-201ENST00000613771 668 ntBASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SLC44A3Q8N4M1 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.71■■□□□ 1.71
SLC44A3Q8N4M1 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SLC44A3Q8N4M1 AC018755.3-202ENST00000596210 929 ntBASIC25.71■■□□□ 1.71
SLC44A3Q8N4M1 ST7-AS1-201ENST00000456775 1889 ntBASIC25.7■■□□□ 1.71
SLC44A3Q8N4M1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SLC44A3Q8N4M1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
SLC44A3Q8N4M1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SLC44A3Q8N4M1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.69■■□□□ 1.7
SLC44A3Q8N4M1 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC25.69■■□□□ 1.7
SLC44A3Q8N4M1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SLC44A3Q8N4M1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SLC44A3Q8N4M1 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC25.68■■□□□ 1.7
SLC44A3Q8N4M1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC25.68■■□□□ 1.7
SLC44A3Q8N4M1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
SLC44A3Q8N4M1 GUSBP5-201ENST00000418136 578 ntBASIC25.67■■□□□ 1.7
SLC44A3Q8N4M1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
SLC44A3Q8N4M1 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.67■■□□□ 1.7
SLC44A3Q8N4M1 THA1P-201ENST00000590384 1145 ntBASIC25.67■■□□□ 1.7
SLC44A3Q8N4M1 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SLC44A3Q8N4M1 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC25.66■■□□□ 1.7
SLC44A3Q8N4M1 MIR4508-201ENST00000584178 70 ntBASIC25.66■■□□□ 1.7
SLC44A3Q8N4M1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.66■■□□□ 1.7
SLC44A3Q8N4M1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SLC44A3Q8N4M1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SLC44A3Q8N4M1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.64■■□□□ 1.7
SLC44A3Q8N4M1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SLC44A3Q8N4M1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SLC44A3Q8N4M1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SLC44A3Q8N4M1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
SLC44A3Q8N4M1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
SLC44A3Q8N4M1 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SLC44A3Q8N4M1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SLC44A3Q8N4M1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SLC44A3Q8N4M1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
SLC44A3Q8N4M1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
SLC44A3Q8N4M1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SLC44A3Q8N4M1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.6■■□□□ 1.69
SLC44A3Q8N4M1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SLC44A3Q8N4M1 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.58■■□□□ 1.69
SLC44A3Q8N4M1 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SLC44A3Q8N4M1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.58■■□□□ 1.69
SLC44A3Q8N4M1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SLC44A3Q8N4M1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 AC103724.3-201ENST00000564481 992 ntBASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SLC44A3Q8N4M1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SLC44A3Q8N4M1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
SLC44A3Q8N4M1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 AL031848.2-201ENST00000607670 837 ntBASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.54■■□□□ 1.68
SLC44A3Q8N4M1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms