Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 WHAMMP3-201ENST00000611636 1609 ntBASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 SMPD5-203ENST00000639008 1464 ntBASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 LINC01003-201ENST00000564834 1764 ntBASIC27.76■■■□□ 2.03
CCDC60Q8IWA6 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC60Q8IWA6 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC60Q8IWA6 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.75■■■□□ 2.03
CCDC60Q8IWA6 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
CCDC60Q8IWA6 AC025884.2-201ENST00000553429 711 ntBASIC27.75■■■□□ 2.03
CCDC60Q8IWA6 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
CCDC60Q8IWA6 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC60Q8IWA6 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.72■■■□□ 2.03
CCDC60Q8IWA6 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC27.72■■■□□ 2.03
CCDC60Q8IWA6 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
CCDC60Q8IWA6 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC60Q8IWA6 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
CCDC60Q8IWA6 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC60Q8IWA6 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC60Q8IWA6 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC27.71■■■□□ 2.03
CCDC60Q8IWA6 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
CCDC60Q8IWA6 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC27.7■■■□□ 2.02
CCDC60Q8IWA6 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
CCDC60Q8IWA6 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC60Q8IWA6 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC60Q8IWA6 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC60Q8IWA6 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC60Q8IWA6 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC27.68■■■□□ 2.02
CCDC60Q8IWA6 KRT18P60-201ENST00000312876 1297 ntBASIC27.67■■■□□ 2.02
CCDC60Q8IWA6 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.67■■■□□ 2.02
CCDC60Q8IWA6 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CCDC60Q8IWA6 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CCDC60Q8IWA6 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CCDC60Q8IWA6 AL359504.2-201ENST00000605506 1601 ntBASIC27.66■■■□□ 2.02
CCDC60Q8IWA6 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC27.66■■■□□ 2.02
CCDC60Q8IWA6 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CCDC60Q8IWA6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
CCDC60Q8IWA6 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
CCDC60Q8IWA6 AC012354.3-201ENST00000623734 483 ntBASIC27.65■■■□□ 2.02
CCDC60Q8IWA6 AC009831.1-201ENST00000580420 1582 ntBASIC27.65■■■□□ 2.02
CCDC60Q8IWA6 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.02
CCDC60Q8IWA6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.64■■■□□ 2.02
CCDC60Q8IWA6 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.64■■■□□ 2.02
CCDC60Q8IWA6 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC27.64■■■□□ 2.02
CCDC60Q8IWA6 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.01
CCDC60Q8IWA6 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.62■■■□□ 2.01
CCDC60Q8IWA6 AC142086.6-201ENST00000621154 1765 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 AL449106.1-201ENST00000608517 1980 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 RP9P-202ENST00000450133 1212 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 AC026202.3-201ENST00000600805 1127 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 BX255925.1-201ENST00000566954 1854 ntBASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
CCDC60Q8IWA6 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 AC133552.2-201ENST00000619106 1032 ntBASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCDC60Q8IWA6 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 AC093536.1-201ENST00000569153 554 ntBASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 GFER-205ENST00000569451 517 ntTSL 5 BASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
CCDC60Q8IWA6 AL592293.1-201ENST00000502889 1188 ntBASIC27.58■■■□□ 2.01
CCDC60Q8IWA6 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
CCDC60Q8IWA6 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC27.57■■■□□ 2
CCDC60Q8IWA6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.57■■■□□ 2
CCDC60Q8IWA6 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.56■■■□□ 2
CCDC60Q8IWA6 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
CCDC60Q8IWA6 MIR3960-201ENST00000583311 91 ntBASIC27.56■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms