Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.15■■□□□ 1.94
CNKSR3Q6P9H4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.15■■□□□ 1.94
CNKSR3Q6P9H4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.15■■□□□ 1.94
CNKSR3Q6P9H4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CNKSR3Q6P9H4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.14■■□□□ 1.94
CNKSR3Q6P9H4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CNKSR3Q6P9H4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CNKSR3Q6P9H4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.14■■□□□ 1.94
CNKSR3Q6P9H4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CNKSR3Q6P9H4 AC018755.3-202ENST00000596210 929 ntBASIC27.13■■□□□ 1.93
CNKSR3Q6P9H4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CNKSR3Q6P9H4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 AC103834.1-201ENST00000520383 144 ntBASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.12■■□□□ 1.93
CNKSR3Q6P9H4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CNKSR3Q6P9H4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CNKSR3Q6P9H4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CNKSR3Q6P9H4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CNKSR3Q6P9H4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CNKSR3Q6P9H4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CNKSR3Q6P9H4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CNKSR3Q6P9H4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CNKSR3Q6P9H4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CNKSR3Q6P9H4 AL592295.1-201ENST00000400984 884 ntBASIC27.09■■□□□ 1.93
CNKSR3Q6P9H4 PVT1_1.1-201ENST00000615125 194 ntBASIC27.09■■□□□ 1.93
CNKSR3Q6P9H4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
CNKSR3Q6P9H4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CNKSR3Q6P9H4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.08■■□□□ 1.93
CNKSR3Q6P9H4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CNKSR3Q6P9H4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.07■■□□□ 1.92
CNKSR3Q6P9H4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.07■■□□□ 1.92
CNKSR3Q6P9H4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC27.07■■□□□ 1.92
CNKSR3Q6P9H4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
CNKSR3Q6P9H4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CNKSR3Q6P9H4 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.06■■□□□ 1.92
CNKSR3Q6P9H4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CNKSR3Q6P9H4 AP002414.2-202ENST00000590929 1450 ntBASIC27.06■■□□□ 1.92
CNKSR3Q6P9H4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CNKSR3Q6P9H4 MIR4508-201ENST00000584178 70 ntBASIC27.05■■□□□ 1.92
CNKSR3Q6P9H4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CNKSR3Q6P9H4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
CNKSR3Q6P9H4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC27.04■■□□□ 1.92
CNKSR3Q6P9H4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.04■■□□□ 1.92
CNKSR3Q6P9H4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC27.04■■□□□ 1.92
CNKSR3Q6P9H4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.03■■□□□ 1.92
CNKSR3Q6P9H4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.03■■□□□ 1.92
CNKSR3Q6P9H4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.02■■□□□ 1.92
CNKSR3Q6P9H4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 ABCB10P3-201ENST00000561950 2166 ntBASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CNKSR3Q6P9H4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CNKSR3Q6P9H4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CNKSR3Q6P9H4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CNKSR3Q6P9H4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CNKSR3Q6P9H4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CNKSR3Q6P9H4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.99■■□□□ 1.91
CNKSR3Q6P9H4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
CNKSR3Q6P9H4 AL139393.2-201ENST00000608721 2025 ntBASIC26.99■■□□□ 1.91
CNKSR3Q6P9H4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 GUSBP5-201ENST00000418136 578 ntBASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 OR2A1-AS1-204ENST00000470435 602 ntBASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 AC131212.1-201ENST00000613771 668 ntBASIC26.98■■□□□ 1.91
CNKSR3Q6P9H4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CNKSR3Q6P9H4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CNKSR3Q6P9H4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
CNKSR3Q6P9H4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.96■■□□□ 1.91
CNKSR3Q6P9H4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
CNKSR3Q6P9H4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
CNKSR3Q6P9H4 AL359504.2-201ENST00000605506 1601 ntBASIC26.95■■□□□ 1.91
CNKSR3Q6P9H4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
CNKSR3Q6P9H4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CNKSR3Q6P9H4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
CNKSR3Q6P9H4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.94■■□□□ 1.9
CNKSR3Q6P9H4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.94■■□□□ 1.9
CNKSR3Q6P9H4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.94■■□□□ 1.9
CNKSR3Q6P9H4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.93■■□□□ 1.9
CNKSR3Q6P9H4 AC103724.3-201ENST00000564481 992 ntBASIC26.93■■□□□ 1.9
CNKSR3Q6P9H4 THA1P-201ENST00000590384 1145 ntBASIC26.93■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms