Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RNF4P78317 AL157400.5-201ENST00000507624 621 ntBASIC22.98■■□□□ 1.27
RNF4P78317 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.98■■□□□ 1.27
RNF4P78317 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
RNF4P78317 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
RNF4P78317 ECEL1P2-201ENST00000461596 1295 ntBASIC22.97■■□□□ 1.27
RNF4P78317 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RNF4P78317 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RNF4P78317 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
RNF4P78317 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.96■■□□□ 1.27
RNF4P78317 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
RNF4P78317 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
RNF4P78317 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.94■■□□□ 1.26
RNF4P78317 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.94■■□□□ 1.26
RNF4P78317 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.94■■□□□ 1.26
RNF4P78317 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RNF4P78317 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RNF4P78317 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.93■■□□□ 1.26
RNF4P78317 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RNF4P78317 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.93■■□□□ 1.26
RNF4P78317 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RNF4P78317 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RNF4P78317 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RNF4P78317 AL449106.1-201ENST00000608517 1980 ntBASIC22.92■■□□□ 1.26
RNF4P78317 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.91■■□□□ 1.26
RNF4P78317 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
RNF4P78317 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RNF4P78317 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF4P78317 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF4P78317 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF4P78317 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.9■■□□□ 1.26
RNF4P78317 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
RNF4P78317 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
RNF4P78317 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
RNF4P78317 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.89■■□□□ 1.26
RNF4P78317 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
RNF4P78317 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
RNF4P78317 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.89■■□□□ 1.25
RNF4P78317 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF4P78317 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF4P78317 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF4P78317 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.88■■□□□ 1.25
RNF4P78317 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF4P78317 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
RNF4P78317 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.88■■□□□ 1.25
RNF4P78317 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF4P78317 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
RNF4P78317 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF4P78317 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF4P78317 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
RNF4P78317 SMPD5-203ENST00000639008 1464 ntBASIC22.86■■□□□ 1.25
RNF4P78317 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF4P78317 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF4P78317 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF4P78317 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF4P78317 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF4P78317 AL359504.2-201ENST00000605506 1601 ntBASIC22.86■■□□□ 1.25
RNF4P78317 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
RNF4P78317 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
RNF4P78317 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF4P78317 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF4P78317 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF4P78317 AC025884.2-201ENST00000553429 711 ntBASIC22.84■■□□□ 1.25
RNF4P78317 ABHD17AP5-201ENST00000580133 923 ntBASIC22.84■■□□□ 1.25
RNF4P78317 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF4P78317 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.83■■□□□ 1.25
RNF4P78317 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.83■■□□□ 1.25
RNF4P78317 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.83■■□□□ 1.25
RNF4P78317 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF4P78317 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF4P78317 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.82■■□□□ 1.24
RNF4P78317 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.82■■□□□ 1.24
RNF4P78317 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
RNF4P78317 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.81■■□□□ 1.24
RNF4P78317 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
RNF4P78317 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
RNF4P78317 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.8■■□□□ 1.24
RNF4P78317 AC007029.1-201ENST00000604183 313 ntBASIC22.8■■□□□ 1.24
RNF4P78317 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
RNF4P78317 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
RNF4P78317 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
RNF4P78317 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.79■■□□□ 1.24
RNF4P78317 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
RNF4P78317 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
RNF4P78317 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.78■■□□□ 1.24
RNF4P78317 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
RNF4P78317 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
RNF4P78317 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RNF4P78317 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RNF4P78317 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
RNF4P78317 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.77■■□□□ 1.24
RNF4P78317 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.77■■□□□ 1.24
RNF4P78317 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.23
RNF4P78317 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.77■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms