Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA3P55318 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA3P55318 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA3P55318 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA3P55318 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA3P55318 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA3P55318 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA3P55318 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
FOXA3P55318 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA3P55318 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA3P55318 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA3P55318 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA3P55318 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA3P55318 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA3P55318 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
FOXA3P55318 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA3P55318 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA3P55318 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA3P55318 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
FOXA3P55318 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
FOXA3P55318 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA3P55318 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA3P55318 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA3P55318 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA3P55318 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA3P55318 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA3P55318 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
FOXA3P55318 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXA3P55318 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
FOXA3P55318 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA3P55318 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
FOXA3P55318 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.38■□□□□ 0.53
FOXA3P55318 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA3P55318 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA3P55318 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXA3P55318 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
FOXA3P55318 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA3P55318 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA3P55318 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA3P55318 AP004609.3-201ENST00000610705 1884 ntBASIC18.37■□□□□ 0.53
FOXA3P55318 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.37■□□□□ 0.53
FOXA3P55318 ERN1-208ENST00000606895 2068 ntBASIC18.37■□□□□ 0.53
FOXA3P55318 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA3P55318 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA3P55318 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA3P55318 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA3P55318 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
FOXA3P55318 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA3P55318 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA3P55318 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA3P55318 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA3P55318 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA3P55318 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA3P55318 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXA3P55318 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXA3P55318 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXA3P55318 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
FOXA3P55318 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXA3P55318 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA3P55318 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA3P55318 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA3P55318 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA3P55318 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA3P55318 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA3P55318 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA3P55318 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA3P55318 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA3P55318 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA3P55318 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA3P55318 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
FOXA3P55318 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.31■□□□□ 0.52
FOXA3P55318 AC135983.2-203ENST00000454486 1613 ntBASIC18.31■□□□□ 0.52
FOXA3P55318 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA3P55318 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA3P55318 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
FOXA3P55318 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA3P55318 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA3P55318 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA3P55318 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
FOXA3P55318 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA3P55318 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA3P55318 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC18.29■□□□□ 0.52
FOXA3P55318 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA3P55318 AC142381.3-201ENST00000568208 1670 ntBASIC18.28■□□□□ 0.52
FOXA3P55318 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA3P55318 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
FOXA3P55318 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA3P55318 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 703 ms