Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PVT1_1.1-201ENST00000615125 194 ntBASIC25.14■■□□□ 1.62
CXCL12P48061 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.14■■□□□ 1.61
CXCL12P48061 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.14■■□□□ 1.61
CXCL12P48061 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.13■■□□□ 1.61
CXCL12P48061 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.13■■□□□ 1.61
CXCL12P48061 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CXCL12P48061 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CXCL12P48061 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.13■■□□□ 1.61
CXCL12P48061 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CXCL12P48061 GUSBP5-201ENST00000418136 578 ntBASIC25.12■■□□□ 1.61
CXCL12P48061 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.12■■□□□ 1.61
CXCL12P48061 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CXCL12P48061 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CXCL12P48061 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CXCL12P48061 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC25.11■■□□□ 1.61
CXCL12P48061 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CXCL12P48061 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CXCL12P48061 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CXCL12P48061 MIR4508-201ENST00000584178 70 ntBASIC25.1■■□□□ 1.61
CXCL12P48061 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CXCL12P48061 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
CXCL12P48061 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.09■■□□□ 1.61
CXCL12P48061 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
CXCL12P48061 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CXCL12P48061 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.08■■□□□ 1.61
CXCL12P48061 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC25.08■■□□□ 1.61
CXCL12P48061 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.08■■□□□ 1.61
CXCL12P48061 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.6
CXCL12P48061 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CXCL12P48061 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CXCL12P48061 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CXCL12P48061 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CXCL12P48061 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CXCL12P48061 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CXCL12P48061 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CXCL12P48061 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.05■■□□□ 1.6
CXCL12P48061 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.05■■□□□ 1.6
CXCL12P48061 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CXCL12P48061 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CXCL12P48061 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CXCL12P48061 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
CXCL12P48061 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.04■■□□□ 1.6
CXCL12P48061 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CXCL12P48061 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CXCL12P48061 IDNK-201ENST00000376417 511 ntTSL 5 BASIC25.03■■□□□ 1.6
CXCL12P48061 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CXCL12P48061 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.03■■□□□ 1.6
CXCL12P48061 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CXCL12P48061 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CXCL12P48061 ST7-AS1-201ENST00000456775 1889 ntBASIC25.02■■□□□ 1.6
CXCL12P48061 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CXCL12P48061 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CXCL12P48061 AL031848.2-201ENST00000607670 837 ntBASIC25.02■■□□□ 1.6
CXCL12P48061 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CXCL12P48061 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.01■■□□□ 1.59
CXCL12P48061 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CXCL12P48061 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CXCL12P48061 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CXCL12P48061 MTX2-204ENST00000443241 799 ntTSL 3 BASIC25.01■■□□□ 1.59
CXCL12P48061 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.01■■□□□ 1.59
CXCL12P48061 AC103724.3-201ENST00000564481 992 ntBASIC25.01■■□□□ 1.59
CXCL12P48061 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CXCL12P48061 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CXCL12P48061 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25■■□□□ 1.59
CXCL12P48061 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CXCL12P48061 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CXCL12P48061 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CXCL12P48061 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CXCL12P48061 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC24.99■■□□□ 1.59
CXCL12P48061 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CXCL12P48061 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CXCL12P48061 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.99■■□□□ 1.59
CXCL12P48061 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.99■■□□□ 1.59
CXCL12P48061 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CXCL12P48061 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.98■■□□□ 1.59
CXCL12P48061 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CXCL12P48061 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.98■■□□□ 1.59
CXCL12P48061 AL356441.2-201ENST00000443009 864 ntBASIC24.98■■□□□ 1.59
CXCL12P48061 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.98■■□□□ 1.59
CXCL12P48061 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.97■■□□□ 1.59
CXCL12P48061 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CXCL12P48061 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CXCL12P48061 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CXCL12P48061 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CXCL12P48061 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CXCL12P48061 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
CXCL12P48061 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
CXCL12P48061 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
CXCL12P48061 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
CXCL12P48061 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.94■■□□□ 1.58
CXCL12P48061 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.58
CXCL12P48061 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
CXCL12P48061 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CXCL12P48061 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CXCL12P48061 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.93■■□□□ 1.58
CXCL12P48061 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.93■■□□□ 1.58
CXCL12P48061 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.93■■□□□ 1.58
CXCL12P48061 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
CXCL12P48061 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CXCL12P48061 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms