Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
TPM1P09493 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
TPM1P09493 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.02■■□□□ 1.92
TPM1P09493 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.02■■□□□ 1.92
TPM1P09493 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
TPM1P09493 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TPM1P09493 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC27.01■■□□□ 1.91
TPM1P09493 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27■■□□□ 1.91
TPM1P09493 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27■■□□□ 1.91
TPM1P09493 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27■■□□□ 1.91
TPM1P09493 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
TPM1P09493 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
TPM1P09493 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
TPM1P09493 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.99■■□□□ 1.91
TPM1P09493 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC26.98■■□□□ 1.91
TPM1P09493 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.98■■□□□ 1.91
TPM1P09493 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
TPM1P09493 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
TPM1P09493 DUX4L28-201ENST00000623687 678 ntBASIC26.97■■□□□ 1.91
TPM1P09493 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
TPM1P09493 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
TPM1P09493 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.96■■□□□ 1.91
TPM1P09493 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.96■■□□□ 1.91
TPM1P09493 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.96■■□□□ 1.91
TPM1P09493 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.96■■□□□ 1.91
TPM1P09493 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TPM1P09493 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC26.95■■□□□ 1.9
TPM1P09493 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
TPM1P09493 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.95■■□□□ 1.9
TPM1P09493 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
TPM1P09493 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
TPM1P09493 MIR3665-201ENST00000578708 105 ntBASIC26.94■■□□□ 1.9
TPM1P09493 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
TPM1P09493 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
TPM1P09493 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.93■■□□□ 1.9
TPM1P09493 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
TPM1P09493 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.93■■□□□ 1.9
TPM1P09493 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
TPM1P09493 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.93■■□□□ 1.9
TPM1P09493 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
TPM1P09493 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
TPM1P09493 AC142472.1-201ENST00000612013 1741 ntBASIC26.93■■□□□ 1.9
TPM1P09493 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
TPM1P09493 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
TPM1P09493 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
TPM1P09493 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.92■■□□□ 1.9
TPM1P09493 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
TPM1P09493 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
TPM1P09493 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.92■■□□□ 1.9
TPM1P09493 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.92■■□□□ 1.9
TPM1P09493 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.92■■□□□ 1.9
TPM1P09493 AC093323.1-202ENST00000635031 2045 ntBASIC26.92■■□□□ 1.9
TPM1P09493 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.91■■□□□ 1.9
TPM1P09493 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TPM1P09493 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
TPM1P09493 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
TPM1P09493 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
TPM1P09493 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.9■■□□□ 1.9
TPM1P09493 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
TPM1P09493 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
TPM1P09493 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
TPM1P09493 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
TPM1P09493 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
TPM1P09493 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
TPM1P09493 AC110285.7-201ENST00000624417 1536 ntBASIC26.89■■□□□ 1.89
TPM1P09493 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
TPM1P09493 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TPM1P09493 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TPM1P09493 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
TPM1P09493 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.87■■□□□ 1.89
TPM1P09493 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
TPM1P09493 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26.86■■□□□ 1.89
TPM1P09493 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
TPM1P09493 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
TPM1P09493 WHAMMP3-201ENST00000611636 1609 ntBASIC26.86■■□□□ 1.89
TPM1P09493 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
TPM1P09493 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
TPM1P09493 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
TPM1P09493 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
TPM1P09493 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
TPM1P09493 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.85■■□□□ 1.89
TPM1P09493 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
TPM1P09493 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TPM1P09493 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TPM1P09493 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TPM1P09493 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.84■■□□□ 1.89
TPM1P09493 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
TPM1P09493 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
TPM1P09493 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
TPM1P09493 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms