Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CD74P04233 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CD74P04233 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CD74P04233 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC20.77■□□□□ 0.92
CD74P04233 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CD74P04233 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CD74P04233 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CD74P04233 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CD74P04233 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CD74P04233 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CD74P04233 CAHM-201ENST00000604200 896 ntBASIC20.76■□□□□ 0.91
CD74P04233 AC142381.3-201ENST00000568208 1670 ntBASIC20.76■□□□□ 0.91
CD74P04233 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CD74P04233 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CD74P04233 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CD74P04233 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CD74P04233 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CD74P04233 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CD74P04233 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CD74P04233 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CD74P04233 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CD74P04233 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CD74P04233 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CD74P04233 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CD74P04233 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CD74P04233 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CD74P04233 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.74■□□□□ 0.91
CD74P04233 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CD74P04233 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.74■□□□□ 0.91
CD74P04233 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CD74P04233 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CD74P04233 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CD74P04233 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CD74P04233 LINC00273-201ENST00000539813 1452 ntBASIC20.73■□□□□ 0.91
CD74P04233 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CD74P04233 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CD74P04233 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CD74P04233 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.72■□□□□ 0.91
CD74P04233 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CD74P04233 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.72■□□□□ 0.91
CD74P04233 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CD74P04233 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
CD74P04233 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CD74P04233 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CD74P04233 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.71■□□□□ 0.91
CD74P04233 AC010501.1-201ENST00000606270 1962 ntBASIC20.71■□□□□ 0.91
CD74P04233 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
CD74P04233 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CD74P04233 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
CD74P04233 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CD74P04233 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CD74P04233 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CD74P04233 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CD74P04233 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CD74P04233 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CD74P04233 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CD74P04233 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.69■□□□□ 0.9
CD74P04233 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.69■□□□□ 0.9
CD74P04233 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.69■□□□□ 0.9
CD74P04233 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CD74P04233 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CD74P04233 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CD74P04233 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CD74P04233 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CD74P04233 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CD74P04233 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.68■□□□□ 0.9
CD74P04233 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.68■□□□□ 0.9
CD74P04233 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CD74P04233 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CD74P04233 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CD74P04233 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CD74P04233 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CD74P04233 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CD74P04233 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.67■□□□□ 0.9
CD74P04233 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CD74P04233 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.66■□□□□ 0.9
CD74P04233 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CD74P04233 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CD74P04233 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CD74P04233 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CD74P04233 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CD74P04233 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.65■□□□□ 0.9
CD74P04233 AL139125.2-201ENST00000623134 1869 ntBASIC20.64■□□□□ 0.9
CD74P04233 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CD74P04233 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CD74P04233 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CD74P04233 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CD74P04233 MIR762-201ENST00000390236 83 ntBASIC20.63■□□□□ 0.89
CD74P04233 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
CD74P04233 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CD74P04233 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CD74P04233 WHAMMP3-201ENST00000611636 1609 ntBASIC20.63■□□□□ 0.89
CD74P04233 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CD74P04233 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms