Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC33.22■■■□□ 2.91
COL3A1P02461 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC33.22■■■□□ 2.91
COL3A1P02461 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
COL3A1P02461 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC33.21■■■□□ 2.91
COL3A1P02461 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
COL3A1P02461 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
COL3A1P02461 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC33.2■■■□□ 2.9
COL3A1P02461 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
COL3A1P02461 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC33.19■■■□□ 2.9
COL3A1P02461 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL3A1P02461 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL3A1P02461 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC33.18■■■□□ 2.9
COL3A1P02461 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.18■■■□□ 2.9
COL3A1P02461 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL3A1P02461 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL3A1P02461 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL3A1P02461 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL3A1P02461 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL3A1P02461 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC33.17■■■□□ 2.9
COL3A1P02461 AC007029.1-201ENST00000604183 313 ntBASIC33.17■■■□□ 2.9
COL3A1P02461 AL449106.1-201ENST00000608517 1980 ntBASIC33.16■■■□□ 2.9
COL3A1P02461 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL3A1P02461 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC33.16■■■□□ 2.9
COL3A1P02461 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL3A1P02461 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL3A1P02461 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC33.15■■■□□ 2.9
COL3A1P02461 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC33.15■■■□□ 2.9
COL3A1P02461 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC33.14■■■□□ 2.9
COL3A1P02461 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
COL3A1P02461 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC33.14■■■□□ 2.9
COL3A1P02461 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
COL3A1P02461 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL3A1P02461 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL3A1P02461 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC33.13■■■□□ 2.89
COL3A1P02461 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC33.12■■■□□ 2.89
COL3A1P02461 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
COL3A1P02461 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
COL3A1P02461 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.89
COL3A1P02461 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
COL3A1P02461 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC33.11■■■□□ 2.89
COL3A1P02461 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC33.11■■■□□ 2.89
COL3A1P02461 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC33.11■■■□□ 2.89
COL3A1P02461 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
COL3A1P02461 HYI-213ENST00000583037 1322 ntTSL 5 BASIC33.1■■■□□ 2.89
COL3A1P02461 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
COL3A1P02461 U85056.1-201ENST00000616429 682 ntBASIC33.09■■■□□ 2.89
COL3A1P02461 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
COL3A1P02461 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC33.07■■■□□ 2.88
COL3A1P02461 NTF6A-201ENST00000591175 560 ntBASIC33.07■■■□□ 2.88
COL3A1P02461 AL359504.2-201ENST00000605506 1601 ntBASIC33.07■■■□□ 2.88
COL3A1P02461 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC33.07■■■□□ 2.88
COL3A1P02461 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL3A1P02461 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC33.06■■■□□ 2.88
COL3A1P02461 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
COL3A1P02461 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC33.05■■■□□ 2.88
COL3A1P02461 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
COL3A1P02461 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
COL3A1P02461 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC33.04■■■□□ 2.88
COL3A1P02461 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
COL3A1P02461 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
COL3A1P02461 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
COL3A1P02461 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC33.03■■■□□ 2.88
COL3A1P02461 SHF-208ENST00000560734 1731 ntTSL 3 BASIC33.03■■■□□ 2.88
COL3A1P02461 REST-210ENST00000638187 1334 ntTSL 5 BASIC33.03■■■□□ 2.88
COL3A1P02461 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC33.02■■■□□ 2.88
COL3A1P02461 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC33.02■■■□□ 2.88
COL3A1P02461 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
COL3A1P02461 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC33.01■■■□□ 2.88
COL3A1P02461 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
COL3A1P02461 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC33.01■■■□□ 2.88
COL3A1P02461 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC33■■■□□ 2.87
COL3A1P02461 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC33■■■□□ 2.87
COL3A1P02461 SMPD5-203ENST00000639008 1464 ntBASIC33■■■□□ 2.87
COL3A1P02461 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
COL3A1P02461 AC009831.1-201ENST00000580420 1582 ntBASIC32.99■■■□□ 2.87
COL3A1P02461 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
COL3A1P02461 PFN2-211ENST00000489155 636 ntTSL 4 BASIC32.99■■■□□ 2.87
COL3A1P02461 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC32.99■■■□□ 2.87
COL3A1P02461 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
COL3A1P02461 KRT18P60-201ENST00000312876 1297 ntBASIC32.98■■■□□ 2.87
COL3A1P02461 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.87
COL3A1P02461 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.98■■■□□ 2.87
COL3A1P02461 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL3A1P02461 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.97■■■□□ 2.87
COL3A1P02461 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
COL3A1P02461 RAP2CP1-202ENST00000605179 643 ntBASIC32.97■■■□□ 2.87
COL3A1P02461 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC32.97■■■□□ 2.87
COL3A1P02461 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
COL3A1P02461 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC32.96■■■□□ 2.87
COL3A1P02461 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
COL3A1P02461 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
COL3A1P02461 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
COL3A1P02461 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
COL3A1P02461 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
COL3A1P02461 AC093536.1-201ENST00000569153 554 ntBASIC32.95■■■□□ 2.87
COL3A1P02461 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
COL3A1P02461 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC32.94■■■□□ 2.86
COL3A1P02461 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC32.94■■■□□ 2.86
COL3A1P02461 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC32.94■■■□□ 2.86
COL3A1P02461 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms