Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
PCF11O94913 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC39.23■■■■□ 3.87
PCF11O94913 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
PCF11O94913 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
PCF11O94913 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC39.23■■■■□ 3.87
PCF11O94913 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
PCF11O94913 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
PCF11O94913 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC39.22■■■■□ 3.87
PCF11O94913 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC39.22■■■■□ 3.87
PCF11O94913 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC39.21■■■■□ 3.87
PCF11O94913 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC39.21■■■■□ 3.87
PCF11O94913 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC39.21■■■■□ 3.87
PCF11O94913 AC133552.2-201ENST00000619106 1032 ntBASIC39.21■■■■□ 3.87
PCF11O94913 MTURN-203ENST00000409688 843 ntTSL 2 BASIC39.21■■■■□ 3.87
PCF11O94913 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC39.21■■■■□ 3.87
PCF11O94913 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC39.2■■■■□ 3.87
PCF11O94913 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC39.2■■■■□ 3.87
PCF11O94913 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC39.2■■■■□ 3.87
PCF11O94913 SPCS2P3-201ENST00000500401 656 ntBASIC39.2■■■■□ 3.87
PCF11O94913 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC39.19■■■■□ 3.86
PCF11O94913 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
PCF11O94913 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
PCF11O94913 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
PCF11O94913 PROC-203ENST00000409048 1586 ntTSL 5 BASIC39.18■■■■□ 3.86
PCF11O94913 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC39.17■■■■□ 3.86
PCF11O94913 DUX4L9-201ENST00000449051 1259 ntBASIC39.17■■■■□ 3.86
PCF11O94913 RP9P-202ENST00000450133 1212 ntBASIC39.17■■■■□ 3.86
PCF11O94913 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC39.17■■■■□ 3.86
PCF11O94913 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC39.17■■■■□ 3.86
PCF11O94913 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC39.17■■■■□ 3.86
PCF11O94913 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC39.16■■■■□ 3.86
PCF11O94913 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC39.16■■■■□ 3.86
PCF11O94913 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC39.16■■■■□ 3.86
PCF11O94913 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC39.14■■■■□ 3.86
PCF11O94913 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC39.14■■■■□ 3.86
PCF11O94913 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC39.13■■■■□ 3.85
PCF11O94913 PFN2-211ENST00000489155 636 ntTSL 4 BASIC39.13■■■■□ 3.85
PCF11O94913 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC39.13■■■■□ 3.85
PCF11O94913 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC39.12■■■■□ 3.85
PCF11O94913 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC39.12■■■■□ 3.85
PCF11O94913 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC39.12■■■■□ 3.85
PCF11O94913 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC39.12■■■■□ 3.85
PCF11O94913 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC39.12■■■■□ 3.85
PCF11O94913 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC39.12■■■■□ 3.85
PCF11O94913 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
PCF11O94913 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
PCF11O94913 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC39.11■■■■□ 3.85
PCF11O94913 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
PCF11O94913 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC39.11■■■■□ 3.85
PCF11O94913 WHAMMP3-201ENST00000611636 1609 ntBASIC39.11■■■■□ 3.85
PCF11O94913 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC39.1■■■■□ 3.85
PCF11O94913 DRD5P2-201ENST00000421395 2012 ntBASIC39.1■■■■□ 3.85
PCF11O94913 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC39.1■■■■□ 3.85
PCF11O94913 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
PCF11O94913 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC39.09■■■■□ 3.85
PCF11O94913 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC39.09■■■■□ 3.85
PCF11O94913 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC39.09■■■■□ 3.85
PCF11O94913 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC39.08■■■■□ 3.85
PCF11O94913 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC39.08■■■■□ 3.85
PCF11O94913 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC39.07■■■■□ 3.85
PCF11O94913 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC39.07■■■■□ 3.85
PCF11O94913 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC39.07■■■■□ 3.84
PCF11O94913 MIR3960-201ENST00000583311 91 ntBASIC39.07■■■■□ 3.84
PCF11O94913 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC39.06■■■■□ 3.84
PCF11O94913 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC39.05■■■■□ 3.84
PCF11O94913 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC39.05■■■■□ 3.84
PCF11O94913 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC39.05■■■■□ 3.84
PCF11O94913 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC39.04■■■■□ 3.84
PCF11O94913 AL359504.2-201ENST00000605506 1601 ntBASIC39.04■■■■□ 3.84
PCF11O94913 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
PCF11O94913 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC39.03■■■■□ 3.84
PCF11O94913 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC39.03■■■■□ 3.84
PCF11O94913 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
PCF11O94913 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC39.02■■■■□ 3.84
PCF11O94913 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
PCF11O94913 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC39.01■■■■□ 3.84
PCF11O94913 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC39■■■■□ 3.83
PCF11O94913 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC39■■■■□ 3.83
PCF11O94913 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC39■■■■□ 3.83
PCF11O94913 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC39■■■■□ 3.83
PCF11O94913 AL035685.1-201ENST00000636663 812 ntBASIC39■■■■□ 3.83
PCF11O94913 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
PCF11O94913 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC39■■■■□ 3.83
PCF11O94913 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC38.99■■■■□ 3.83
PCF11O94913 DUX4L18-201ENST00000553347 1267 ntBASIC38.99■■■■□ 3.83
PCF11O94913 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
PCF11O94913 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC38.98■■■■□ 3.83
PCF11O94913 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC38.98■■■■□ 3.83
PCF11O94913 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC38.98■■■■□ 3.83
PCF11O94913 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC38.98■■■■□ 3.83
PCF11O94913 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC38.97■■■■□ 3.83
PCF11O94913 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC38.97■■■■□ 3.83
PCF11O94913 TRIR-205ENST00000592273 783 ntTSL 3 BASIC38.96■■■■□ 3.83
PCF11O94913 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC38.96■■■■□ 3.83
PCF11O94913 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC38.95■■■■□ 3.83
PCF11O94913 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC38.95■■■■□ 3.83
PCF11O94913 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC38.95■■■■□ 3.83
PCF11O94913 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC38.94■■■■□ 3.82
PCF11O94913 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC38.94■■■■□ 3.82
PCF11O94913 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms