Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP1O15259 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.34■■■□□ 2.61
NPHP1O15259 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC31.33■■■□□ 2.61
NPHP1O15259 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.33■■■□□ 2.61
NPHP1O15259 MIR3960-201ENST00000583311 91 ntBASIC31.33■■■□□ 2.61
NPHP1O15259 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.33■■■□□ 2.61
NPHP1O15259 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP1O15259 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
NPHP1O15259 RAP2CP1-202ENST00000605179 643 ntBASIC31.32■■■□□ 2.6
NPHP1O15259 AC074183.2-201ENST00000623112 922 ntBASIC31.32■■■□□ 2.6
NPHP1O15259 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP1O15259 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP1O15259 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP1O15259 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.31■■■□□ 2.6
NPHP1O15259 YBX1P4-201ENST00000392794 808 ntBASIC31.31■■■□□ 2.6
NPHP1O15259 SPCS2P3-201ENST00000500401 656 ntBASIC31.31■■■□□ 2.6
NPHP1O15259 MIR6765-201ENST00000614092 87 ntBASIC31.31■■■□□ 2.6
NPHP1O15259 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.31■■■□□ 2.6
NPHP1O15259 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP1O15259 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP1O15259 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.3■■■□□ 2.6
NPHP1O15259 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP1O15259 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP1O15259 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
NPHP1O15259 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NPHP1O15259 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.29■■■□□ 2.6
NPHP1O15259 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP1O15259 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP1O15259 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.27■■■□□ 2.6
NPHP1O15259 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.27■■■□□ 2.6
NPHP1O15259 AC018755.3-202ENST00000596210 929 ntBASIC31.27■■■□□ 2.6
NPHP1O15259 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.27■■■□□ 2.6
NPHP1O15259 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC31.27■■■□□ 2.6
NPHP1O15259 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
NPHP1O15259 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP1O15259 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP1O15259 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP1O15259 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.26■■■□□ 2.59
NPHP1O15259 ABCB10P3-201ENST00000561950 2166 ntBASIC31.26■■■□□ 2.59
NPHP1O15259 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP1O15259 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP1O15259 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
NPHP1O15259 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP1O15259 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
NPHP1O15259 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.25■■■□□ 2.59
NPHP1O15259 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP1O15259 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP1O15259 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.24■■■□□ 2.59
NPHP1O15259 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP1O15259 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.24■■■□□ 2.59
NPHP1O15259 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.24■■■□□ 2.59
NPHP1O15259 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP1O15259 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP1O15259 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
NPHP1O15259 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
NPHP1O15259 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.23■■■□□ 2.59
NPHP1O15259 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP1O15259 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.23■■■□□ 2.59
NPHP1O15259 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP1O15259 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.22■■■□□ 2.59
NPHP1O15259 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP1O15259 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC31.21■■■□□ 2.59
NPHP1O15259 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP1O15259 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP1O15259 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP1O15259 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
NPHP1O15259 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NPHP1O15259 AC009299.2-201ENST00000482477 511 ntBASIC31.2■■■□□ 2.59
NPHP1O15259 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.2■■■□□ 2.58
NPHP1O15259 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
NPHP1O15259 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP1O15259 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP1O15259 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.19■■■□□ 2.58
NPHP1O15259 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.19■■■□□ 2.58
NPHP1O15259 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP1O15259 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.19■■■□□ 2.58
NPHP1O15259 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP1O15259 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP1O15259 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.18■■■□□ 2.58
NPHP1O15259 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.18■■■□□ 2.58
NPHP1O15259 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.17■■■□□ 2.58
NPHP1O15259 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.17■■■□□ 2.58
NPHP1O15259 AL139393.2-201ENST00000608721 2025 ntBASIC31.16■■■□□ 2.58
NPHP1O15259 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP1O15259 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP1O15259 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.16■■■□□ 2.58
NPHP1O15259 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.15■■■□□ 2.58
NPHP1O15259 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP1O15259 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP1O15259 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC31.14■■■□□ 2.58
NPHP1O15259 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP1O15259 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP1O15259 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP1O15259 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.14■■■□□ 2.58
NPHP1O15259 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP1O15259 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
NPHP1O15259 AP002414.2-202ENST00000590929 1450 ntBASIC31.13■■■□□ 2.57
NPHP1O15259 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP1O15259 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP1O15259 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms