Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.37■■□□□ 1.65
CBX4O00257 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CBX4O00257 WHAMMP3-201ENST00000611636 1609 ntBASIC25.37■■□□□ 1.65
CBX4O00257 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CBX4O00257 ABHD17AP5-201ENST00000580133 923 ntBASIC25.36■■□□□ 1.65
CBX4O00257 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CBX4O00257 AC092296.2-201ENST00000589470 999 ntBASIC25.35■■□□□ 1.65
CBX4O00257 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CBX4O00257 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CBX4O00257 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.33■■□□□ 1.65
CBX4O00257 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
CBX4O00257 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CBX4O00257 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CBX4O00257 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CBX4O00257 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.32■■□□□ 1.64
CBX4O00257 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CBX4O00257 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CBX4O00257 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
CBX4O00257 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CBX4O00257 AL157400.5-201ENST00000507624 621 ntBASIC25.31■■□□□ 1.64
CBX4O00257 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CBX4O00257 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CBX4O00257 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CBX4O00257 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CBX4O00257 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CBX4O00257 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CBX4O00257 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CBX4O00257 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.28■■□□□ 1.64
CBX4O00257 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CBX4O00257 ECEL1P2-201ENST00000461596 1295 ntBASIC25.28■■□□□ 1.64
CBX4O00257 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.28■■□□□ 1.64
CBX4O00257 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CBX4O00257 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
CBX4O00257 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CBX4O00257 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.27■■□□□ 1.64
CBX4O00257 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CBX4O00257 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.27■■□□□ 1.64
CBX4O00257 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CBX4O00257 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.27■■□□□ 1.64
CBX4O00257 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.27■■□□□ 1.64
CBX4O00257 AL449106.1-201ENST00000608517 1980 ntBASIC25.27■■□□□ 1.64
CBX4O00257 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CBX4O00257 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CBX4O00257 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.26■■□□□ 1.63
CBX4O00257 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CBX4O00257 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CBX4O00257 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
CBX4O00257 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CBX4O00257 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
CBX4O00257 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
CBX4O00257 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.24■■□□□ 1.63
CBX4O00257 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC25.24■■□□□ 1.63
CBX4O00257 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.24■■□□□ 1.63
CBX4O00257 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CBX4O00257 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.23■■□□□ 1.63
CBX4O00257 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CBX4O00257 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
CBX4O00257 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
CBX4O00257 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.22■■□□□ 1.63
CBX4O00257 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CBX4O00257 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.22■■□□□ 1.63
CBX4O00257 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CBX4O00257 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CBX4O00257 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
CBX4O00257 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CBX4O00257 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.2■■□□□ 1.62
CBX4O00257 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.2■■□□□ 1.62
CBX4O00257 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
CBX4O00257 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.19■■□□□ 1.62
CBX4O00257 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
CBX4O00257 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC25.19■■□□□ 1.62
CBX4O00257 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CBX4O00257 SMPD5-203ENST00000639008 1464 ntBASIC25.19■■□□□ 1.62
CBX4O00257 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CBX4O00257 AL359504.2-201ENST00000605506 1601 ntBASIC25.19■■□□□ 1.62
CBX4O00257 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
CBX4O00257 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CBX4O00257 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.18■■□□□ 1.62
CBX4O00257 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CBX4O00257 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CBX4O00257 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.17■■□□□ 1.62
CBX4O00257 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CBX4O00257 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CBX4O00257 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CBX4O00257 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.16■■□□□ 1.62
CBX4O00257 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
CBX4O00257 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CBX4O00257 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CBX4O00257 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CBX4O00257 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.15■■□□□ 1.62
CBX4O00257 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CBX4O00257 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CBX4O00257 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CBX4O00257 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms