Protein–RNA interactions for Protein: A0A087WSZ9

TRAV30, T-cell receptor alpha variable 30 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV30A0A087WSZ9 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV30A0A087WSZ9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV30A0A087WSZ9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TRAV30A0A087WSZ9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV30A0A087WSZ9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV30A0A087WSZ9 AC142472.1-201ENST00000612013 1741 ntBASIC19.25■□□□□ 0.67
TRAV30A0A087WSZ9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV30A0A087WSZ9 AC091060.1-201ENST00000623524 1766 ntBASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRAV30A0A087WSZ9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV30A0A087WSZ9 AC145676.1-201ENST00000514988 2004 ntBASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 AC008813.1-201ENST00000536597 885 ntBASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAV30A0A087WSZ9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 RPS2P35-201ENST00000443417 897 ntBASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TRAV30A0A087WSZ9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L13-201ENST00000554103 1267 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L15-201ENST00000611059 1267 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L23-201ENST00000615195 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L24-201ENST00000617576 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L22-201ENST00000618238 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L20-201ENST00000619712 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L21-201ENST00000622058 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L10-201ENST00000622460 1267 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DUX4L25-201ENST00000624915 1269 ntBASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV30A0A087WSZ9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV30A0A087WSZ9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV30A0A087WSZ9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRAV30A0A087WSZ9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV30A0A087WSZ9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV30A0A087WSZ9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV30A0A087WSZ9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 AC092803.2-201ENST00000564287 1899 ntBASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRAV30A0A087WSZ9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV30A0A087WSZ9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV30A0A087WSZ9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 DUX4L11-201ENST00000611504 1267 ntBASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 DUX4L12-201ENST00000614593 1267 ntBASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 DUX4L14-201ENST00000621227 1267 ntBASIC19.14■□□□□ 0.65
TRAV30A0A087WSZ9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms