Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.74■□□□□ 0.59
HMGA1P17096 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.74■□□□□ 0.59
HMGA1P17096 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 ABCD1P5-201ENST00000445663 754 ntBASIC18.74■□□□□ 0.59
HMGA1P17096 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 DUTP2-201ENST00000519164 463 ntBASIC18.74■□□□□ 0.59
HMGA1P17096 AL773604.1-201ENST00000617417 272 ntBASIC18.74■□□□□ 0.59
HMGA1P17096 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
HMGA1P17096 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGA1P17096 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HMGA1P17096 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
HMGA1P17096 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HMGA1P17096 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGA1P17096 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 KRT8P47-201ENST00000604727 1398 ntBASIC18.73■□□□□ 0.59
HMGA1P17096 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGA1P17096 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 AL022342.1-201ENST00000400363 863 ntBASIC18.73■□□□□ 0.59
HMGA1P17096 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 AC007967.3-201ENST00000434308 558 ntBASIC18.73■□□□□ 0.59
HMGA1P17096 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 AC018712.1-201ENST00000455767 687 ntBASIC18.73■□□□□ 0.59
HMGA1P17096 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGA1P17096 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGA1P17096 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGA1P17096 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.73■□□□□ 0.59
HMGA1P17096 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
HMGA1P17096 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGA1P17096 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
HMGA1P17096 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGA1P17096 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGA1P17096 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
HMGA1P17096 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HMGA1P17096 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGA1P17096 AL031284.1-201ENST00000419297 478 ntBASIC18.72■□□□□ 0.59
HMGA1P17096 AC096633.1-201ENST00000422446 749 ntBASIC18.72■□□□□ 0.59
HMGA1P17096 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HMGA1P17096 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGA1P17096 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGA1P17096 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGA1P17096 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.72■□□□□ 0.59
HMGA1P17096 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGA1P17096 AP001005.1-201ENST00000571755 1248 ntBASIC18.72■□□□□ 0.59
HMGA1P17096 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGA1P17096 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGA1P17096 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGA1P17096 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HMGA1P17096 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGA1P17096 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HMGA1P17096 AC093677.2-201ENST00000600169 1863 ntBASIC18.71■□□□□ 0.59
HMGA1P17096 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 TNXA-203ENST00000507684 2038 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms