Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.26■□□□□ 0.51
TRIM38O00635 AP002414.4-201ENST00000589764 1148 ntBASIC18.26■□□□□ 0.51
TRIM38O00635 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM38O00635 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM38O00635 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM38O00635 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TRIM38O00635 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM38O00635 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TRIM38O00635 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM38O00635 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM38O00635 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM38O00635 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRIM38O00635 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM38O00635 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.25■□□□□ 0.51
TRIM38O00635 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
TRIM38O00635 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM38O00635 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM38O00635 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
TRIM38O00635 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 UNC93B7-201ENST00000509439 705 ntBASIC18.25■□□□□ 0.51
TRIM38O00635 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.25■□□□□ 0.51
TRIM38O00635 KRT8P26-201ENST00000534154 1276 ntBASIC18.25■□□□□ 0.51
TRIM38O00635 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.25■□□□□ 0.51
TRIM38O00635 MIR3917-201ENST00000580971 93 ntBASIC18.25■□□□□ 0.51
TRIM38O00635 AL136038.4-201ENST00000603606 1261 ntBASIC18.25■□□□□ 0.51
TRIM38O00635 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
TRIM38O00635 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM38O00635 AL391807.1-203ENST00000604392 2365 ntBASIC18.25■□□□□ 0.51
TRIM38O00635 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM38O00635 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
TRIM38O00635 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
TRIM38O00635 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.24■□□□□ 0.51
TRIM38O00635 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.24■□□□□ 0.51
TRIM38O00635 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM38O00635 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM38O00635 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM38O00635 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 FZD10-202ENST00000539839 3282 ntBASIC18.23■□□□□ 0.51
TRIM38O00635 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 MIR662-201ENST00000384847 95 ntBASIC18.23■□□□□ 0.51
TRIM38O00635 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
TRIM38O00635 AL845331.1-201ENST00000424978 1190 ntBASIC18.23■□□□□ 0.51
TRIM38O00635 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.23■□□□□ 0.51
TRIM38O00635 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM38O00635 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TRIM38O00635 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms