Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 INTS4P1-201ENST00000438455 1935 ntBASIC28.26■■■□□ 2.11
VPS8Q8N3P4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 REXO1L6P-202ENST00000619970 1078 ntBASIC28.26■■■□□ 2.11
VPS8Q8N3P4 AC010460.3-201ENST00000511359 1579 ntBASIC28.26■■■□□ 2.11
VPS8Q8N3P4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 AC007967.3-201ENST00000434308 558 ntBASIC28.25■■■□□ 2.11
VPS8Q8N3P4 BMF-207ENST00000559701 630 ntTSL 3 BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS8Q8N3P4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 POM121L3P-201ENST00000419331 1163 ntBASIC28.24■■■□□ 2.11
VPS8Q8N3P4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS8Q8N3P4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 AC009533.2-201ENST00000543664 586 ntBASIC28.23■■■□□ 2.11
VPS8Q8N3P4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS8Q8N3P4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
VPS8Q8N3P4 FLJ13224-201ENST00000313737 1514 ntBASIC28.22■■■□□ 2.11
VPS8Q8N3P4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 RCN1P2-201ENST00000398357 915 ntBASIC28.21■■■□□ 2.11
VPS8Q8N3P4 KRT16P4-201ENST00000453883 522 ntBASIC28.21■■■□□ 2.11
VPS8Q8N3P4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 AC091304.2-201ENST00000564639 760 ntBASIC28.21■■■□□ 2.11
VPS8Q8N3P4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms