Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.43■■□□□ 1.02
HMGB1P09429 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
HMGB1P09429 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.42■■□□□ 1.02
HMGB1P09429 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
HMGB1P09429 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGB1P09429 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGB1P09429 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGB1P09429 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 LINC00167-201ENST00000530583 1419 ntBASIC21.42■■□□□ 1.02
HMGB1P09429 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGB1P09429 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.42■■□□□ 1.02
HMGB1P09429 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGB1P09429 AL133373.2-201ENST00000623187 2828 ntBASIC21.42■■□□□ 1.02
HMGB1P09429 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGB1P09429 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGB1P09429 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGB1P09429 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGB1P09429 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
HMGB1P09429 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
HMGB1P09429 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGB1P09429 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.41■■□□□ 1.02
HMGB1P09429 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGB1P09429 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.41■■□□□ 1.02
HMGB1P09429 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
HMGB1P09429 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGB1P09429 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 HCG11-201ENST00000411553 5696 ntBASIC21.4■■□□□ 1.02
HMGB1P09429 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 AC022898.2-201ENST00000616822 1312 ntBASIC21.4■■□□□ 1.02
HMGB1P09429 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.4■■□□□ 1.02
HMGB1P09429 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGB1P09429 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGB1P09429 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGB1P09429 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.02
HMGB1P09429 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGB1P09429 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGB1P09429 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
HMGB1P09429 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
HMGB1P09429 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB1P09429 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB1P09429 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB1P09429 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB1P09429 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGB1P09429 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms