Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX1P48742 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.23■□□□□ 0.67
LHX1P48742 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LHX1P48742 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX1P48742 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX1P48742 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LHX1P48742 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LHX1P48742 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
LHX1P48742 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.22■□□□□ 0.67
LHX1P48742 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LHX1P48742 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LHX1P48742 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.22■□□□□ 0.67
LHX1P48742 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.22■□□□□ 0.67
LHX1P48742 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.22■□□□□ 0.67
LHX1P48742 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX1P48742 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX1P48742 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
LHX1P48742 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 IGHV3-47-201ENST00000425060 335 ntBASIC19.21■□□□□ 0.67
LHX1P48742 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LHX1P48742 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.21■□□□□ 0.67
LHX1P48742 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LHX1P48742 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.21■□□□□ 0.67
LHX1P48742 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.21■□□□□ 0.67
LHX1P48742 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX1P48742 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.21■□□□□ 0.67
LHX1P48742 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX1P48742 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX1P48742 AC132938.6-201ENST00000623828 1655 ntBASIC19.2■□□□□ 0.66
LHX1P48742 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.2■□□□□ 0.66
LHX1P48742 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LHX1P48742 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
LHX1P48742 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX1P48742 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LHX1P48742 AL450487.1-201ENST00000426799 995 ntBASIC19.2■□□□□ 0.66
LHX1P48742 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.2■□□□□ 0.66
LHX1P48742 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX1P48742 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX1P48742 AP005901.3-202ENST00000581653 237 ntBASIC19.2■□□□□ 0.66
LHX1P48742 AC090164.3-201ENST00000610780 2143 ntBASIC19.2■□□□□ 0.66
LHX1P48742 AC012313.10-201ENST00000623509 926 ntBASIC19.2■□□□□ 0.66
LHX1P48742 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX1P48742 AC093677.2-201ENST00000600169 1863 ntBASIC19.2■□□□□ 0.66
LHX1P48742 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX1P48742 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX1P48742 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.19■□□□□ 0.66
LHX1P48742 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.19■□□□□ 0.66
LHX1P48742 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LHX1P48742 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.19■□□□□ 0.66
LHX1P48742 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms