Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CHKB-CPT1BH3BT56 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 USP3-204ENST00000540797 5474 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 AL451085.2-201ENST00000605085 799 ntBASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
CHKB-CPT1BH3BT56 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CHKB-CPT1BH3BT56 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 1224.7 ms