RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MYT1Q01538 1121 aa21.46■■□□□ 1.03
COL6A3-203ENST00000353578 PELP1Q8IZL8 1130 aaKnown RBP21.22■□□□□ 0.99
COL6A3-203ENST00000353578 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
COL6A3-203ENST00000353578 CENPBP07199 599 aaPredicted RBP19.88■□□□□ 0.77
COL6A3-203ENST00000353578 TTBK1Q5TCY1 1321 aaPredicted RBP19.77■□□□□ 0.75
COL6A3-203ENST00000353578 ZEB1P37275 1124 aaPredicted RBP19.73■□□□□ 0.75
COL6A3-203ENST00000353578 ERICH6Q7L0X2 663 aa19.7■□□□□ 0.74
COL6A3-203ENST00000353578 YTHDC1Q96MU7 727 aaKnown RBP19.66■□□□□ 0.74
COL6A3-203ENST00000353578 NEFLP07196 543 aa19.14■□□□□ 0.65
COL6A3-203ENST00000353578 APLP2Q06481 763 aa18.93■□□□□ 0.62
COL6A3-203ENST00000353578 SUPT5HO00267 1087 aaKnown RBP18.84■□□□□ 0.61
COL6A3-203ENST00000353578 NISCHQ9Y2I1 1504 aa18.81■□□□□ 0.6
COL6A3-203ENST00000353578 PCGF6Q9BYE7 350 aa18.8■□□□□ 0.6
COL6A3-203ENST00000353578 DCAF8L2P0C7V8 631 aa18.76■□□□□ 0.59
COL6A3-203ENST00000353578 DAXXQ9UER7 740 aaPredicted RBP18.68■□□□□ 0.58
COL6A3-203ENST00000353578 RTL5Q5HYW3 569 aaPredicted RBP18.62■□□□□ 0.57
COL6A3-203ENST00000353578 MYT1LQ9UL68 1186 aa18.58■□□□□ 0.56
COL6A3-203ENST00000353578 HRCP23327 699 aa18.56■□□□□ 0.56
COL6A3-203ENST00000353578 GLIPR1L2Q4G1C9 344 aa18.51■□□□□ 0.55
COL6A3-203ENST00000353578 CLSPNQ9HAW4 1339 aa18.49■□□□□ 0.55
COL6A3-203ENST00000353578 FAM9AQ8IZU1 332 aaPredicted RBP18.41■□□□□ 0.54
COL6A3-203ENST00000353578 TRIM26Q12899 539 aaPredicted RBP18.34■□□□□ 0.53
COL6A3-203ENST00000353578 ZNF316A6NFI3 1004 aaPredicted RBP18.19■□□□□ 0.5
COL6A3-203ENST00000353578 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
COL6A3-203ENST00000353578 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
COL6A3-203ENST00000353578 CDK11AQ9UQ88 783 aaPredicted RBP17.87■□□□□ 0.45
COL6A3-203ENST00000353578 TRIM41Q8WV44 630 aa17.84■□□□□ 0.45
COL6A3-203ENST00000353578 ANP32AP39687 249 aaKnown RBP17.77■□□□□ 0.43
COL6A3-203ENST00000353578 GTF3C3Q9Y5Q9 886 aa17.75■□□□□ 0.43
COL6A3-203ENST00000353578 ANP32BQ92688 251 aaKnown RBP17.73■□□□□ 0.43
COL6A3-203ENST00000353578 ACIN1Q9UKV3 1341 aaKnown RBP17.71■□□□□ 0.43
COL6A3-203ENST00000353578 EHMT2Q96KQ7 1210 aa17.67■□□□□ 0.42
COL6A3-203ENST00000353578 EIF5BO60841 1220 aaKnown RBP17.61■□□□□ 0.41
COL6A3-203ENST00000353578 RANGAP1P46060 587 aaPredicted RBP17.55■□□□□ 0.4
COL6A3-203ENST00000353578 TNNT2P45379 298 aaPredicted RBP17.55■□□□□ 0.4
COL6A3-203ENST00000353578 UBTFP17480 764 aaKnown RBP17.54■□□□□ 0.4
COL6A3-203ENST00000353578 ANP32EQ9BTT0 268 aa17.47■□□□□ 0.39
COL6A3-203ENST00000353578 NCLP19338 710 aaKnown RBP17.47■□□□□ 0.39
COL6A3-203ENST00000353578 TRIM44Q96DX7 344 aaPredicted RBP17.38■□□□□ 0.37
COL6A3-203ENST00000353578 ANP32CO43423 234 aa17.37■□□□□ 0.37
COL6A3-203ENST00000353578 DCAF1Q9Y4B6 1507 aa17.3■□□□□ 0.36
COL6A3-203ENST00000353578 ERICH6BQ5W0A0 696 aa17.28■□□□□ 0.36
COL6A3-203ENST00000353578 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.36
COL6A3-203ENST00000353578 ZBTB47Q9UFB7 747 aaPredicted RBP17.26■□□□□ 0.35
COL6A3-203ENST00000353578 PPARGC1BQ86YN6 1023 aaKnown RBP17.22■□□□□ 0.35
COL6A3-203ENST00000353578 CCDC180Q9P1Z9 1646 aa17.22■□□□□ 0.35
COL6A3-203ENST00000353578 DDRGK1Q96HY6 314 aa17.13■□□□□ 0.33
COL6A3-203ENST00000353578 CDK11BP21127 795 aaKnown RBP17.12■□□□□ 0.33
COL6A3-203ENST00000353578 NEFMP07197 916 aa17.1■□□□□ 0.33
COL6A3-203ENST00000353578 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
COL6A3-203ENST00000353578 BCANQ96GW7 911 aa17.07■□□□□ 0.32
COL6A3-203ENST00000353578 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-203ENST00000353578 BCL11AQ9H165 835 aa17.05■□□□□ 0.32
COL6A3-203ENST00000353578 HSP90AA1P07900 732 aaKnown RBP17.05■□□□□ 0.32
COL6A3-203ENST00000353578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-203ENST00000353578 PPM1GO15355 546 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-203ENST00000353578 BECN1Q14457 450 aa16.99■□□□□ 0.31
COL6A3-203ENST00000353578 CANXP27824 592 aaKnown RBP16.97■□□□□ 0.31
COL6A3-203ENST00000353578 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
COL6A3-203ENST00000353578 HNRNPUL2Q1KMD3 747 aaKnown RBP16.94■□□□□ 0.3
COL6A3-203ENST00000353578 ARID4BQ4LE39 1312 aaPredicted RBP16.93■□□□□ 0.3
COL6A3-203ENST00000353578 POLR3GLQ9BT43 218 aa16.92■□□□□ 0.3
COL6A3-203ENST00000353578 GOLGA6L22H0YM25 854 aa16.91■□□□□ 0.3
COL6A3-203ENST00000353578 FKBP8Q14318 412 aa16.89■□□□□ 0.29
COL6A3-203ENST00000353578 NBR1Q14596 966 aa16.86■□□□□ 0.29
COL6A3-203ENST00000353578 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.85■□□□□ 0.29
COL6A3-203ENST00000353578 NEUROD1Q13562 356 aa16.83■□□□□ 0.28
COL6A3-203ENST00000353578 NPM2Q86SE8 214 aaKnown RBP16.81■□□□□ 0.28
COL6A3-203ENST00000353578 CCDC136Q96JN2 1154 aa16.81■□□□□ 0.28
COL6A3-203ENST00000353578 L1TD1Q5T7N2 865 aaKnown RBP16.8■□□□□ 0.28
COL6A3-203ENST00000353578 ZNF326Q5BKZ1 582 aaKnown RBP16.78■□□□□ 0.28
COL6A3-203ENST00000353578 PTMSP20962 102 aa16.75■□□□□ 0.27
COL6A3-203ENST00000353578 NAP1L5Q96NT1 182 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-203ENST00000353578 CHAF1AQ13111 956 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-203ENST00000353578 ITGAEP38570 1179 aa16.72■□□□□ 0.27
COL6A3-203ENST00000353578 LOC105371045A0A1W2PR82 267 aa16.71■□□□□ 0.27
COL6A3-203ENST00000353578 RSPH6AQ9H0K4 717 aa16.7■□□□□ 0.26
COL6A3-203ENST00000353578 NOP58Q9Y2X3 529 aaKnown RBP16.7■□□□□ 0.26
COL6A3-203ENST00000353578 GOLGA6L6A8MZA4 724 aa16.65■□□□□ 0.26
COL6A3-203ENST00000353578 NRDCO43847 1150 aa16.65■□□□□ 0.26
COL6A3-203ENST00000353578 HNRNPUQ00839 825 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL6A3-203ENST00000353578 TONSLQ96HA7 1378 aa16.59■□□□□ 0.25
COL6A3-203ENST00000353578 PTMAP06454 111 aaKnown RBP16.58■□□□□ 0.25
COL6A3-203ENST00000353578 DNTTIP2Q5QJE6 756 aaKnown RBP16.57■□□□□ 0.24
COL6A3-203ENST00000353578 USP35Q9P2H5 1018 aa16.56■□□□□ 0.24
COL6A3-203ENST00000353578 MSNP26038 577 aaKnown RBP16.55■□□□□ 0.24
COL6A3-203ENST00000353578 DEKP35659 375 aaKnown RBP16.53■□□□□ 0.24
COL6A3-203ENST00000353578 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
COL6A3-203ENST00000353578 FAM50AQ14320 339 aaKnown RBP16.52■□□□□ 0.24
COL6A3-203ENST00000353578 MYH16Q9H6N6 1097 aa16.5■□□□□ 0.23
COL6A3-203ENST00000353578 ZRSR1Q15695 479 aaKnown RBP16.47■□□□□ 0.23
COL6A3-203ENST00000353578 LAS1LQ9Y4W2 734 aaKnown RBP16.47■□□□□ 0.23
COL6A3-203ENST00000353578 CFAP44Q96MT7 982 aa16.47■□□□□ 0.23
COL6A3-203ENST00000353578 PNNQ9H307 717 aaKnown RBP16.47■□□□□ 0.23
COL6A3-203ENST00000353578 SLC24A1O60721 1099 aa16.47■□□□□ 0.23
COL6A3-203ENST00000353578 PPP4R2Q9NY27 417 aa16.47■□□□□ 0.23
COL6A3-203ENST00000353578 CNGB1Q14028 1251 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-203ENST00000353578 TRIM52Q96A61 297 aa16.46■□□□□ 0.23
COL6A3-203ENST00000353578 TNNT3P45378 269 aaPredicted RBP16.45■□□□□ 0.22
COL6A3-203ENST00000353578 CALRP27797 417 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms