Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM49BA6NDI0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM49BA6NDI0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 HMGA1P5-201ENST00000412453 271 ntBASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 MIR3180-4-201ENST00000582223 153 ntBASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 LINC01568-207ENST00000641790 1380 ntBASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM49BA6NDI0 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM49BA6NDI0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 AC132938.6-201ENST00000623828 1655 ntBASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM49BA6NDI0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM49BA6NDI0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms