Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.06■□□□□ 0.8
COL6A1P12109 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.06■□□□□ 0.8
COL6A1P12109 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.06■□□□□ 0.8
COL6A1P12109 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.06■□□□□ 0.8
COL6A1P12109 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A1P12109 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL6A1P12109 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A1P12109 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A1P12109 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A1P12109 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 MIR4469-201ENST00000583919 79 ntBASIC20.05■□□□□ 0.8
COL6A1P12109 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A1P12109 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A1P12109 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A1P12109 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A1P12109 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL6A1P12109 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A1P12109 AC009102.3-201ENST00000623118 1491 ntBASIC20.05■□□□□ 0.8
COL6A1P12109 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL6A1P12109 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL6A1P12109 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL6A1P12109 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 AC073621.1-201ENST00000392730 636 ntBASIC20.04■□□□□ 0.8
COL6A1P12109 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A1P12109 AL645939.2-201ENST00000427340 991 ntBASIC20.04■□□□□ 0.8
COL6A1P12109 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 ALG1L5P-201ENST00000482043 771 ntBASIC20.04■□□□□ 0.8
COL6A1P12109 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A1P12109 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 AL024508.2-201ENST00000607749 1894 ntBASIC20.04■□□□□ 0.8
COL6A1P12109 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A1P12109 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A1P12109 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A1P12109 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A1P12109 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A1P12109 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.03■□□□□ 0.8
COL6A1P12109 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A1P12109 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.03■□□□□ 0.8
COL6A1P12109 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL6A1P12109 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
COL6A1P12109 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL6A1P12109 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A1P12109 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A1P12109 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL6A1P12109 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A1P12109 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A1P12109 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A1P12109 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A1P12109 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms