Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.19■□□□□ 0.98
CDKL5O76039 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 RASA4DP-201ENST00000460726 1199 ntBASIC21.19■□□□□ 0.98
CDKL5O76039 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 AL441883.1-201ENST00000566170 1045 ntBASIC21.19■□□□□ 0.98
CDKL5O76039 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CDKL5O76039 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.19■□□□□ 0.98
CDKL5O76039 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CDKL5O76039 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.19■□□□□ 0.98
CDKL5O76039 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CDKL5O76039 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.18■□□□□ 0.98
CDKL5O76039 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.18■□□□□ 0.98
CDKL5O76039 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.18■□□□□ 0.98
CDKL5O76039 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.18■□□□□ 0.98
CDKL5O76039 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 SLC25A6P5-201ENST00000435663 894 ntBASIC21.18■□□□□ 0.98
CDKL5O76039 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
CDKL5O76039 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.18■□□□□ 0.98
CDKL5O76039 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
CDKL5O76039 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDKL5O76039 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.17■□□□□ 0.98
CDKL5O76039 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.17■□□□□ 0.98
CDKL5O76039 YBX1P2-201ENST00000489612 999 ntBASIC21.17■□□□□ 0.98
CDKL5O76039 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.17■□□□□ 0.98
CDKL5O76039 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.17■□□□□ 0.98
CDKL5O76039 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CDKL5O76039 AC139887.4-201ENST00000607877 719 ntBASIC21.17■□□□□ 0.98
CDKL5O76039 AC011558.1-201ENST00000623459 338 ntBASIC21.17■□□□□ 0.98
CDKL5O76039 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CDKL5O76039 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 NOC2LP2-201ENST00000407594 1944 ntBASIC21.17■□□□□ 0.98
CDKL5O76039 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CDKL5O76039 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.17■□□□□ 0.98
CDKL5O76039 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CDKL5O76039 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDKL5O76039 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
CDKL5O76039 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CDKL5O76039 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CDKL5O76039 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CDKL5O76039 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.16■□□□□ 0.98
CDKL5O76039 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
CDKL5O76039 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.16■□□□□ 0.98
CDKL5O76039 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.16■□□□□ 0.98
CDKL5O76039 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms