Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB3O15347 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.69□□□□□ -0.06
HMGB3O15347 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC14.69□□□□□ -0.06
HMGB3O15347 LSM12P1-201ENST00000411836 588 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB3O15347 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB3O15347 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 AC137761.2-201ENST00000561729 223 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 AC145350.3-201ENST00000569033 163 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 AC005181.1-201ENST00000604782 1256 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB3O15347 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB3O15347 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HMGB3O15347 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HMGB3O15347 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 AL645608.8-201ENST00000606034 2086 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 AC138028.4-201ENST00000564984 1845 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB3O15347 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB3O15347 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB3O15347 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 YBX1P10-201ENST00000444752 975 ntBASIC14.68□□□□□ -0.06
HMGB3O15347 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB3O15347 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB3O15347 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB3O15347 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.67□□□□□ -0.06
HMGB3O15347 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGB3O15347 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HMGB3O15347 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 AC093787.1-201ENST00000450396 207 ntBASIC14.67□□□□□ -0.06
HMGB3O15347 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGB3O15347 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGB3O15347 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB3O15347 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB3O15347 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HMGB3O15347 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 SIRPAP1-201ENST00000448467 1770 ntBASIC14.67□□□□□ -0.06
HMGB3O15347 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB3O15347 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB3O15347 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms