Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
VPS13DQ5THJ4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AC006504.4-201ENST00000592118 1568 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AC096633.1-201ENST00000422446 749 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 MCCD1P2-201ENST00000423228 335 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AC108751.1-201ENST00000490852 363 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 OR7E14P-202ENST00000530490 1290 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 MIR3197-201ENST00000582241 73 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 Z83851.2-201ENST00000609564 659 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AP000867.4-201ENST00000641616 219 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 AL161938.1-201ENST00000569833 2180 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 LINC00602-201ENST00000629776 2065 ntBASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13DQ5THJ4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 AL513190.1-201ENST00000621254 727 ntBASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13DQ5THJ4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 AL139288.1-201ENST00000623748 933 ntBASIC12.21□□□□□ -0.46
VPS13DQ5THJ4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MTCL1P1-201ENST00000446207 792 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AC004967.1-201ENST00000453589 447 ntBASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms