Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
RFC3P40938 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.7■□□□□ 0.26
RFC3P40938 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.7■□□□□ 0.26
RFC3P40938 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RFC3P40938 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.7■□□□□ 0.26
RFC3P40938 TOB2P1-201ENST00000469761 992 ntBASIC16.7■□□□□ 0.26
RFC3P40938 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.7■□□□□ 0.26
RFC3P40938 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.7■□□□□ 0.26
RFC3P40938 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
RFC3P40938 IGHV3-41-201ENST00000613121 348 ntBASIC16.7■□□□□ 0.26
RFC3P40938 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
RFC3P40938 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.7■□□□□ 0.26
RFC3P40938 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.7■□□□□ 0.26
RFC3P40938 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
RFC3P40938 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RFC3P40938 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.7■□□□□ 0.26
RFC3P40938 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 TPSP2-201ENST00000561760 610 ntBASIC16.69■□□□□ 0.26
RFC3P40938 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.69■□□□□ 0.26
RFC3P40938 AC009065.1-201ENST00000564055 1225 ntBASIC16.69■□□□□ 0.26
RFC3P40938 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.69■□□□□ 0.26
RFC3P40938 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.69■□□□□ 0.26
RFC3P40938 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.69■□□□□ 0.26
RFC3P40938 GPR32P1-201ENST00000601788 811 ntBASIC16.69■□□□□ 0.26
RFC3P40938 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 AC005332.8-201ENST00000622750 2735 ntBASIC16.69■□□□□ 0.26
RFC3P40938 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.69■□□□□ 0.26
RFC3P40938 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.69■□□□□ 0.26
RFC3P40938 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.69■□□□□ 0.26
RFC3P40938 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFC3P40938 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 HCG11-201ENST00000411553 5696 ntBASIC16.68■□□□□ 0.26
RFC3P40938 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.68■□□□□ 0.26
RFC3P40938 NOC2LP1-202ENST00000452600 2235 ntBASIC16.68■□□□□ 0.26
RFC3P40938 IGHGP-201ENST00000390555 1178 ntBASIC16.68■□□□□ 0.26
RFC3P40938 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
RFC3P40938 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.68■□□□□ 0.26
RFC3P40938 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.68■□□□□ 0.26
RFC3P40938 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.68■□□□□ 0.26
RFC3P40938 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.68■□□□□ 0.26
RFC3P40938 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.68■□□□□ 0.26
RFC3P40938 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.68■□□□□ 0.26
RFC3P40938 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.68■□□□□ 0.26
RFC3P40938 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.68■□□□□ 0.26
RFC3P40938 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
RFC3P40938 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFC3P40938 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.68■□□□□ 0.26
RFC3P40938 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms