Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 AC231657.2-201ENST00000624556 255 ntBASIC18.36■□□□□ 0.53
VIMP08670 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.36■□□□□ 0.53
VIMP08670 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.36■□□□□ 0.53
VIMP08670 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.36■□□□□ 0.53
VIMP08670 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VIMP08670 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VIMP08670 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VIMP08670 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.35■□□□□ 0.53
VIMP08670 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.35■□□□□ 0.53
VIMP08670 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 LINC00602-201ENST00000629776 2065 ntBASIC18.35■□□□□ 0.53
VIMP08670 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VIMP08670 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VIMP08670 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
VIMP08670 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.34■□□□□ 0.53
VIMP08670 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.34■□□□□ 0.53
VIMP08670 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.34■□□□□ 0.53
VIMP08670 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.34■□□□□ 0.53
VIMP08670 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.34■□□□□ 0.53
VIMP08670 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VIMP08670 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.34■□□□□ 0.53
VIMP08670 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.33■□□□□ 0.53
VIMP08670 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.33■□□□□ 0.53
VIMP08670 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.33■□□□□ 0.53
VIMP08670 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.33■□□□□ 0.53
VIMP08670 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.33■□□□□ 0.53
VIMP08670 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VIMP08670 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.33■□□□□ 0.52
VIMP08670 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.33■□□□□ 0.52
VIMP08670 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VIMP08670 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.33■□□□□ 0.52
VIMP08670 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.33■□□□□ 0.52
VIMP08670 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VIMP08670 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.33■□□□□ 0.52
VIMP08670 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VIMP08670 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VIMP08670 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms