Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.13■□□□□ 0.65
APOEP02649 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.13■□□□□ 0.65
APOEP02649 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.13■□□□□ 0.65
APOEP02649 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.13■□□□□ 0.65
APOEP02649 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
APOEP02649 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.13■□□□□ 0.65
APOEP02649 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
APOEP02649 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
APOEP02649 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 MIR149-201ENST00000384879 89 ntBASIC19.12■□□□□ 0.65
APOEP02649 AL031133.1-201ENST00000406807 723 ntBASIC19.12■□□□□ 0.65
APOEP02649 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.12■□□□□ 0.65
APOEP02649 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.12■□□□□ 0.65
APOEP02649 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.12■□□□□ 0.65
APOEP02649 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 AL136038.4-201ENST00000603606 1261 ntBASIC19.12■□□□□ 0.65
APOEP02649 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.12■□□□□ 0.65
APOEP02649 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
APOEP02649 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
APOEP02649 AL354751.1-201ENST00000412768 1863 ntBASIC19.11■□□□□ 0.65
APOEP02649 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.11■□□□□ 0.65
APOEP02649 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 AC009102.3-201ENST00000623118 1491 ntBASIC19.11■□□□□ 0.65
APOEP02649 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.11■□□□□ 0.65
APOEP02649 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
APOEP02649 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.11■□□□□ 0.65
APOEP02649 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.11■□□□□ 0.65
APOEP02649 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.11■□□□□ 0.65
APOEP02649 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.11■□□□□ 0.65
APOEP02649 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
APOEP02649 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
APOEP02649 AL121956.5-201ENST00000625261 221 ntBASIC19.11■□□□□ 0.65
APOEP02649 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
APOEP02649 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
APOEP02649 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.11■□□□□ 0.65
APOEP02649 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
APOEP02649 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
APOEP02649 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
APOEP02649 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
APOEP02649 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.11■□□□□ 0.65
APOEP02649 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOEP02649 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOEP02649 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.1■□□□□ 0.65
APOEP02649 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOEP02649 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOEP02649 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms