Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 LINC00602-201ENST00000629776 2065 ntBASIC22.89■■□□□ 1.26
CACNA1FO60840 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
CACNA1FO60840 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC22.89■■□□□ 1.26
CACNA1FO60840 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
CACNA1FO60840 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.89■■□□□ 1.26
CACNA1FO60840 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC22.89■■□□□ 1.26
CACNA1FO60840 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.89■■□□□ 1.25
CACNA1FO60840 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
CACNA1FO60840 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
CACNA1FO60840 AC138028.4-201ENST00000564984 1845 ntBASIC22.89■■□□□ 1.25
CACNA1FO60840 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CACNA1FO60840 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC22.89■■□□□ 1.25
CACNA1FO60840 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
CACNA1FO60840 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CACNA1FO60840 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC22.89■■□□□ 1.25
CACNA1FO60840 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC22.89■■□□□ 1.25
CACNA1FO60840 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC22.89■■□□□ 1.25
CACNA1FO60840 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.25
CACNA1FO60840 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC22.89■■□□□ 1.25
CACNA1FO60840 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CACNA1FO60840 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC22.89■■□□□ 1.25
CACNA1FO60840 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CACNA1FO60840 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC22.88■■□□□ 1.25
CACNA1FO60840 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC22.88■■□□□ 1.25
CACNA1FO60840 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.88■■□□□ 1.25
CACNA1FO60840 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC22.88■■□□□ 1.25
CACNA1FO60840 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
CACNA1FO60840 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
CACNA1FO60840 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
CACNA1FO60840 MEG3-211ENST00000452514 461 ntTSL 3 BASIC22.88■■□□□ 1.25
CACNA1FO60840 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC22.88■■□□□ 1.25
CACNA1FO60840 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CACNA1FO60840 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 AC022898.2-201ENST00000616822 1312 ntBASIC22.87■■□□□ 1.25
CACNA1FO60840 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 DDX43P3-201ENST00000441064 443 ntBASIC22.87■■□□□ 1.25
CACNA1FO60840 AC068472.1-201ENST00000474589 881 ntBASIC22.87■■□□□ 1.25
CACNA1FO60840 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
CACNA1FO60840 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CACNA1FO60840 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CACNA1FO60840 FLJ13224-201ENST00000313737 1514 ntBASIC22.87■■□□□ 1.25
CACNA1FO60840 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.87■■□□□ 1.25
CACNA1FO60840 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.87■■□□□ 1.25
CACNA1FO60840 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC22.87■■□□□ 1.25
CACNA1FO60840 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CACNA1FO60840 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
CACNA1FO60840 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC22.86■■□□□ 1.25
CACNA1FO60840 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.86■■□□□ 1.25
CACNA1FO60840 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 MED29-202ENST00000594368 1471 ntTSL 2 BASIC22.86■■□□□ 1.25
CACNA1FO60840 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
CACNA1FO60840 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.86■■□□□ 1.25
CACNA1FO60840 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC22.86■■□□□ 1.25
CACNA1FO60840 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC22.86■■□□□ 1.25
CACNA1FO60840 AC138894.3-201ENST00000603787 634 ntBASIC22.86■■□□□ 1.25
CACNA1FO60840 AC092119.3-201ENST00000612618 583 ntBASIC22.86■■□□□ 1.25
CACNA1FO60840 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CACNA1FO60840 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CACNA1FO60840 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CACNA1FO60840 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
CACNA1FO60840 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CACNA1FO60840 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CACNA1FO60840 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CACNA1FO60840 PRELID1P1-202ENST00000567272 903 ntBASIC22.85■■□□□ 1.25
CACNA1FO60840 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CACNA1FO60840 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CACNA1FO60840 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms