Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH3P20585 SPDYE15P-201ENST00000424157 909 ntBASIC18.21■□□□□ 0.51
MSH3P20585 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.21■□□□□ 0.51
MSH3P20585 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH3P20585 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH3P20585 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
MSH3P20585 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH3P20585 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH3P20585 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH3P20585 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
MSH3P20585 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MSH3P20585 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH3P20585 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH3P20585 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
MSH3P20585 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.2■□□□□ 0.5
MSH3P20585 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 FAM8A6P-201ENST00000407496 1135 ntBASIC18.2■□□□□ 0.5
MSH3P20585 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH3P20585 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.2■□□□□ 0.5
MSH3P20585 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH3P20585 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 AC099343.3-201ENST00000605834 2503 ntBASIC18.2■□□□□ 0.5
MSH3P20585 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
MSH3P20585 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MSH3P20585 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
MSH3P20585 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 AC007613.1-201ENST00000572811 2597 ntBASIC18.2■□□□□ 0.5
MSH3P20585 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MSH3P20585 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH3P20585 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
MSH3P20585 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.19■□□□□ 0.5
MSH3P20585 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
MSH3P20585 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 AL590326.2-201ENST00000625139 305 ntBASIC18.19■□□□□ 0.5
MSH3P20585 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
MSH3P20585 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.19■□□□□ 0.5
MSH3P20585 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
MSH3P20585 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH3P20585 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 LETM1P2-201ENST00000597330 2178 ntBASIC18.18■□□□□ 0.5
MSH3P20585 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MSH3P20585 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.18■□□□□ 0.5
MSH3P20585 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH3P20585 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 AC112907.2-201ENST00000448639 330 ntBASIC18.18■□□□□ 0.5
MSH3P20585 KRT18P38-201ENST00000449496 1282 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms