Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 AC239809.2-201ENST00000415381 517 ntBASIC16.79■□□□□ 0.28
DDX28Q9NUL7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 GCSHP5-201ENST00000443090 522 ntBASIC16.79■□□□□ 0.28
DDX28Q9NUL7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 HLA-A-209ENST00000638375 975 ntBASIC16.79■□□□□ 0.28
DDX28Q9NUL7 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 IRX1P1-201ENST00000438849 1838 ntBASIC16.79■□□□□ 0.28
DDX28Q9NUL7 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 AC046158.3-201ENST00000624947 2558 ntBASIC16.79■□□□□ 0.28
DDX28Q9NUL7 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 AC128676.1-201ENST00000454392 318 ntBASIC16.78■□□□□ 0.28
DDX28Q9NUL7 AC098590.1-201ENST00000468126 897 ntBASIC16.78■□□□□ 0.28
DDX28Q9NUL7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DDX28Q9NUL7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 SIRPAP1-201ENST00000448467 1770 ntBASIC16.77■□□□□ 0.28
DDX28Q9NUL7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
DDX28Q9NUL7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms