Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AL355355.2-201ENST00000442321 338 ntBASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AF186192.3-201ENST00000583427 947 ntBASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DEPDC4Q8N2C3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AC112777.1-201ENST00000540175 1423 ntBASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AC073195.1-201ENST00000607241 877 ntBASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 RCC2P6-201ENST00000526625 1557 ntBASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.05■□□□□ 0.32
DEPDC4Q8N2C3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms