Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 TSPY14P-201ENST00000303979 915 ntBASIC16.69■□□□□ 0.26
NIPAL3Q6P499 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 EGLN1P1-201ENST00000531623 762 ntBASIC16.69■□□□□ 0.26
NIPAL3Q6P499 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 AL353719.1-201ENST00000566847 864 ntBASIC16.69■□□□□ 0.26
NIPAL3Q6P499 AL023803.3-201ENST00000615559 522 ntBASIC16.69■□□□□ 0.26
NIPAL3Q6P499 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 AC073912.3-201ENST00000624414 853 ntBASIC16.69■□□□□ 0.26
NIPAL3Q6P499 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NIPAL3Q6P499 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 AP003041.3-201ENST00000527151 707 ntBASIC16.68■□□□□ 0.26
NIPAL3Q6P499 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 AC008556.1-201ENST00000610908 2040 ntBASIC16.68■□□□□ 0.26
NIPAL3Q6P499 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 GPAT2P1-201ENST00000444924 1672 ntBASIC16.68■□□□□ 0.26
NIPAL3Q6P499 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NIPAL3Q6P499 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 GNAS-203ENST00000306120 1878 ntBASIC16.67■□□□□ 0.26
NIPAL3Q6P499 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 LINC01568-207ENST00000641790 1380 ntBASIC16.67■□□□□ 0.26
NIPAL3Q6P499 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 AL023284.2-201ENST00000405850 579 ntBASIC16.67■□□□□ 0.26
NIPAL3Q6P499 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 AC007663.1-201ENST00000438948 1240 ntBASIC16.67■□□□□ 0.26
NIPAL3Q6P499 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 MCCD1P1-208ENST00000445732 328 ntBASIC16.67■□□□□ 0.26
NIPAL3Q6P499 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NIPAL3Q6P499 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms