Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 RBM17P1-201ENST00000453646 1190 ntBASIC20.91■□□□□ 0.94
ATL3Q6DD88 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.91■□□□□ 0.94
ATL3Q6DD88 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATL3Q6DD88 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 AL024508.2-201ENST00000607749 1894 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 DUTP2-201ENST00000519164 463 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 FITM1-202ENST00000559294 800 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 Z99916.2-201ENST00000604037 246 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 AC010653.2-201ENST00000623505 997 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 AC116562.4-202ENST00000641738 218 ntBASIC20.9■□□□□ 0.94
ATL3Q6DD88 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATL3Q6DD88 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
ATL3Q6DD88 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATL3Q6DD88 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.89■□□□□ 0.94
ATL3Q6DD88 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATL3Q6DD88 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATL3Q6DD88 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
ATL3Q6DD88 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.89■□□□□ 0.93
ATL3Q6DD88 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.89■□□□□ 0.93
ATL3Q6DD88 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATL3Q6DD88 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AC007663.1-201ENST00000438948 1240 ntBASIC20.88■□□□□ 0.93
ATL3Q6DD88 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATL3Q6DD88 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.88■□□□□ 0.93
ATL3Q6DD88 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
ATL3Q6DD88 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
ATL3Q6DD88 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
ATL3Q6DD88 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATL3Q6DD88 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms