Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.2■□□□□ 0.66
CBX1P83916 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CBX1P83916 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CBX1P83916 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 AC104417.2-201ENST00000562989 1793 ntBASIC19.19■□□□□ 0.66
CBX1P83916 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CBX1P83916 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 KRT16P3-201ENST00000439127 1283 ntBASIC19.19■□□□□ 0.66
CBX1P83916 AC009299.2-201ENST00000482477 511 ntBASIC19.19■□□□□ 0.66
CBX1P83916 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.19■□□□□ 0.66
CBX1P83916 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CBX1P83916 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.19■□□□□ 0.66
CBX1P83916 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX1P83916 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX1P83916 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX1P83916 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CBX1P83916 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX1P83916 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX1P83916 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX1P83916 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX1P83916 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CBX1P83916 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX1P83916 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.17■□□□□ 0.66
CBX1P83916 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CBX1P83916 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX1P83916 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.17■□□□□ 0.66
CBX1P83916 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.17■□□□□ 0.66
CBX1P83916 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX1P83916 AL138724.1-201ENST00000606771 1088 ntBASIC19.17■□□□□ 0.66
CBX1P83916 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC19.17■□□□□ 0.66
CBX1P83916 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX1P83916 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CBX1P83916 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX1P83916 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX1P83916 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX1P83916 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.16■□□□□ 0.66
CBX1P83916 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX1P83916 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CBX1P83916 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms