Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CKS1BP61024 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
CKS1BP61024 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.83□□□□□ -0.35
CKS1BP61024 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CKS1BP61024 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CKS1BP61024 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC12.83□□□□□ -0.36
CKS1BP61024 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 APTR-203ENST00000430801 583 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 KRT18P5-201ENST00000436075 1291 ntBASIC12.83□□□□□ -0.36
CKS1BP61024 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC12.83□□□□□ -0.36
CKS1BP61024 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CKS1BP61024 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CKS1BP61024 AC022211.2-201ENST00000585075 2527 ntBASIC12.83□□□□□ -0.36
CKS1BP61024 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CKS1BP61024 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 RER1-204ENST00000378518 522 ntTSL 3 BASIC12.82□□□□□ -0.36
CKS1BP61024 GPX1P1-201ENST00000388829 606 ntBASIC12.82□□□□□ -0.36
CKS1BP61024 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC12.82□□□□□ -0.36
CKS1BP61024 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC12.82□□□□□ -0.36
CKS1BP61024 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC12.82□□□□□ -0.36
CKS1BP61024 AC005181.1-201ENST00000604782 1256 ntBASIC12.82□□□□□ -0.36
CKS1BP61024 RAP2CP1-201ENST00000605103 478 ntBASIC12.82□□□□□ -0.36
CKS1BP61024 AC087623.3-201ENST00000607047 1098 ntBASIC12.82□□□□□ -0.36
CKS1BP61024 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC12.82□□□□□ -0.36
CKS1BP61024 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS1BP61024 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS1BP61024 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS1BP61024 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms