Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 RASA4DP-201ENST00000460726 1199 ntBASIC17.95■□□□□ 0.46
SHMT2P34897 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 MIR3917-201ENST00000580971 93 ntBASIC17.95■□□□□ 0.46
SHMT2P34897 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 NTF6B-201ENST00000591913 560 ntBASIC17.95■□□□□ 0.46
SHMT2P34897 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SHMT2P34897 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 AC020916.1-201ENST00000587762 1774 ntBASIC17.94■□□□□ 0.46
SHMT2P34897 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.94■□□□□ 0.46
SHMT2P34897 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.94■□□□□ 0.46
SHMT2P34897 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 KRT18P35-201ENST00000510488 1269 ntBASIC17.94■□□□□ 0.46
SHMT2P34897 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.94■□□□□ 0.46
SHMT2P34897 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SHMT2P34897 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.94■□□□□ 0.46
SHMT2P34897 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 KRT8P50-201ENST00000562022 1438 ntBASIC17.94■□□□□ 0.46
SHMT2P34897 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SHMT2P34897 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SHMT2P34897 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHMT2P34897 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 SPDYE15P-201ENST00000424157 909 ntBASIC17.93■□□□□ 0.46
SHMT2P34897 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 AL445228.2-201ENST00000605589 952 ntBASIC17.93■□□□□ 0.46
SHMT2P34897 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.93■□□□□ 0.46
SHMT2P34897 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHMT2P34897 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
SHMT2P34897 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHMT2P34897 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.93■□□□□ 0.46
SHMT2P34897 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHMT2P34897 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SHMT2P34897 ANO7L1-203ENST00000602586 1720 ntBASIC17.92■□□□□ 0.46
SHMT2P34897 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SHMT2P34897 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.92■□□□□ 0.46
SHMT2P34897 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SHMT2P34897 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.92■□□□□ 0.46
SHMT2P34897 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 KRT18P38-201ENST00000449496 1282 ntBASIC17.92■□□□□ 0.46
SHMT2P34897 AC087388.1-201ENST00000571370 1112 ntBASIC17.92■□□□□ 0.46
SHMT2P34897 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms