Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.96■□□□□ 0.15
COL8A1P27658 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
COL8A1P27658 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
COL8A1P27658 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
COL8A1P27658 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL8A1P27658 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL8A1P27658 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL8A1P27658 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL8A1P27658 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
COL8A1P27658 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL8A1P27658 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.96■□□□□ 0.14
COL8A1P27658 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.95■□□□□ 0.14
COL8A1P27658 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 AL645939.2-201ENST00000427340 991 ntBASIC15.95■□□□□ 0.14
COL8A1P27658 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.95■□□□□ 0.14
COL8A1P27658 AC009533.2-201ENST00000543664 586 ntBASIC15.95■□□□□ 0.14
COL8A1P27658 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.95■□□□□ 0.14
COL8A1P27658 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.95■□□□□ 0.14
COL8A1P27658 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.95■□□□□ 0.14
COL8A1P27658 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.95■□□□□ 0.14
COL8A1P27658 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
COL8A1P27658 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL8A1P27658 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
COL8A1P27658 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
COL8A1P27658 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
COL8A1P27658 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 ME2-216ENST00000639850 2331 ntTSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.94■□□□□ 0.14
COL8A1P27658 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.94■□□□□ 0.14
COL8A1P27658 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.94■□□□□ 0.14
COL8A1P27658 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.94■□□□□ 0.14
COL8A1P27658 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.94■□□□□ 0.14
COL8A1P27658 AC011467.4-201ENST00000594891 528 ntBASIC15.94■□□□□ 0.14
COL8A1P27658 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 AP002414.3-201ENST00000589352 1468 ntBASIC15.94■□□□□ 0.14
COL8A1P27658 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
COL8A1P27658 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
COL8A1P27658 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
COL8A1P27658 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL8A1P27658 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 AC006333.2-201ENST00000607957 2099 ntBASIC15.93■□□□□ 0.14
COL8A1P27658 AL512353.2-201ENST00000448759 1962 ntBASIC15.93■□□□□ 0.14
COL8A1P27658 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.93■□□□□ 0.14
COL8A1P27658 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
COL8A1P27658 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.93■□□□□ 0.14
COL8A1P27658 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms