Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC43Q96MW1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 AC009065.1-201ENST00000564055 1225 ntBASIC20.69■□□□□ 0.9
CCDC43Q96MW1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC43Q96MW1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 AP000593.1-201ENST00000393668 712 ntBASIC20.68■□□□□ 0.9
CCDC43Q96MW1 SEC1P-202ENST00000473944 940 ntBASIC20.68■□□□□ 0.9
CCDC43Q96MW1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 AC087388.1-201ENST00000571370 1112 ntBASIC20.68■□□□□ 0.9
CCDC43Q96MW1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC43Q96MW1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 NTF6B-201ENST00000591913 560 ntBASIC20.67■□□□□ 0.9
CCDC43Q96MW1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 ANO7L1-203ENST00000602586 1720 ntBASIC20.67■□□□□ 0.9
CCDC43Q96MW1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC43Q96MW1 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms