Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00643Q86TS7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 REXO1L9P-201ENST00000604264 2108 ntBASIC11.45□□□□□ -0.58
LINC00643Q86TS7 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 FAM45BP-202ENST00000592932 1624 ntBASIC11.45□□□□□ -0.58
LINC00643Q86TS7 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00643Q86TS7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms