Protein–RNA interactions for Protein: P48539

PCP4, Calmodulin regulator protein PCP4, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCP4P48539 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.63□□□□□ -0.39
PCP4P48539 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.63□□□□□ -0.39
PCP4P48539 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC12.63□□□□□ -0.39
PCP4P48539 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
PCP4P48539 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC12.63□□□□□ -0.39
PCP4P48539 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.63□□□□□ -0.39
PCP4P48539 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PCP4P48539 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PCP4P48539 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.62□□□□□ -0.39
PCP4P48539 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
PCP4P48539 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PCP4P48539 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
PCP4P48539 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.61□□□□□ -0.39
PCP4P48539 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
PCP4P48539 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 AC005089.1-201ENST00000619486 2241 ntBASIC12.61□□□□□ -0.39
PCP4P48539 NARF-204ENST00000390006 1766 ntTSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC12.61□□□□□ -0.39
PCP4P48539 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
PCP4P48539 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PCP4P48539 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PCP4P48539 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PCP4P48539 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
PCP4P48539 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.6□□□□□ -0.39
PCP4P48539 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.6□□□□□ -0.39
PCP4P48539 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PCP4P48539 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PCP4P48539 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC12.6□□□□□ -0.39
PCP4P48539 AC006486.2-201ENST00000624246 2199 ntBASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms