Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ECH1-217ENST00000602115 209 ntTSL 320.76■□□□□ 0.914e-12■■□□□ 13.3
YBX3P16989 ECH1-214ENST00000601094 440 ntTSL 215.01□□□□□ -0.014e-12■■□□□ 13.3
YBX3P16989 ECH1-205ENST00000595567 308 ntTSL 310.75□□□□□ -0.694e-12■■□□□ 13.3
YBX3P16989 ECH1-209ENST00000597805 135 ntTSL 58.24□□□□□ -1.094e-12■■□□□ 13.3
YBX3P16989 ECH1-208ENST00000597205 169 ntTSL 58.2□□□□□ -1.14e-12■■□□□ 13.3
YBX3P16989 PPP2R5C-203ENST00000350249 3845 ntTSL 1 (best) BASIC13.33□□□□□ -0.283e-7■■□□□ 13.3
YBX3P16989 PPP2R5C-202ENST00000334743 4328 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.693e-7■■□□□ 13.3
YBX3P16989 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.144e-7■■□□□ 13.3
YBX3P16989 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.144e-7■■□□□ 13.3
YBX3P16989 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.694e-7■■□□□ 13.3
YBX3P16989 PRPF8-206ENST00000572723 959 ntTSL 215.88■□□□□ 0.132e-8■■□□□ 13.3
YBX3P16989 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.648e-7■■□□□ 13.3
YBX3P16989 KLHDC10-203ENST00000468226 772 ntTSL 39.31□□□□□ -0.924e-7■■□□□ 13.3
YBX3P16989 CTDNEP1-209ENST00000574205 1506 ntTSL 541.79■■■■■ 4.281e-6■■□□□ 13.3
YBX3P16989 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.921e-6■■□□□ 13.3
YBX3P16989 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.99■■■□□ 2.871e-6■■□□□ 13.3
YBX3P16989 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.861e-6■■□□□ 13.3
YBX3P16989 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC23.56■■□□□ 1.361e-6■■□□□ 13.3
YBX3P16989 CTDNEP1-205ENST00000570828 986 ntTSL 316.54■□□□□ 0.241e-6■■□□□ 13.3
YBX3P16989 FTSJ1-206ENST00000473235 688 ntTSL 525.99■■□□□ 1.752e-7■■□□□ 13.3
YBX3P16989 FTSJ1-209ENST00000487353 838 ntTSL 522.27■■□□□ 1.162e-7■■□□□ 13.3
YBX3P16989 FTSJ1-208ENST00000485486 547 ntTSL 321.37■■□□□ 1.012e-7■■□□□ 13.3
YBX3P16989 FTSJ1-212ENST00000492562 610 ntTSL 321.32■■□□□ 12e-7■■□□□ 13.3
YBX3P16989 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.422e-6■■□□□ 13.3
YBX3P16989 FOXRED1-207ENST00000527004 1760 ntTSL 517.38■□□□□ 0.372e-6■■□□□ 13.3
YBX3P16989 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.332e-6■■□□□ 13.3
YBX3P16989 FOXRED1-218ENST00000534315 2210 ntTSL 1 (best)14.69□□□□□ -0.062e-6■■□□□ 13.3
YBX3P16989 FOXRED1-217ENST00000534011 1955 ntTSL 214.09□□□□□ -0.152e-6■■□□□ 13.3
YBX3P16989 FOXRED1-210ENST00000530642 3045 ntTSL 29.14□□□□□ -0.952e-6■■□□□ 13.3
YBX3P16989 ARPC1B-217ENST00000481997 945 ntTSL 218.73■□□□□ 0.595e-9■■□□□ 13.3
YBX3P16989 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.88■□□□□ 0.451e-7■■□□□ 13.3
YBX3P16989 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.28■□□□□ 0.361e-7■■□□□ 13.3
YBX3P16989 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.071e-7■■□□□ 13.3
YBX3P16989 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.261e-7■■□□□ 13.2
YBX3P16989 UCA1-202ENST00000589333 433 ntTSL 37.72□□□□□ -1.175e-10■■□□□ 13.2
YBX3P16989 UCA1-203ENST00000600160 436 ntTSL 27.21□□□□□ -1.265e-10■■□□□ 13.2
YBX3P16989 FADS1-212ENST00000539419 563 ntTSL 416.64■□□□□ 0.255e-13■■□□□ 13.2
YBX3P16989 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.916e-42■■□□□ 13.2
YBX3P16989 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.876e-42■■□□□ 13.2
YBX3P16989 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.856e-42■■□□□ 13.2
YBX3P16989 RPS5-203ENST00000596314 718 ntTSL 519.84■□□□□ 0.776e-42■■□□□ 13.2
YBX3P16989 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.3■□□□□ 0.526e-42■■□□□ 13.2
YBX3P16989 RPS5-205ENST00000598495 800 ntTSL 3 BASIC17.21■□□□□ 0.356e-42■■□□□ 13.2
YBX3P16989 CSNK2B-205ENST00000465481 579 ntTSL 1 (best)21.22■□□□□ 0.992e-12■■□□□ 13.2
YBX3P16989 DEAF1-212ENST00000530813 668 ntTSL 516.77■□□□□ 0.286e-7■■□□□ 13.2
YBX3P16989 DEAF1-204ENST00000525904 797 ntTSL 316.77■□□□□ 0.286e-7■■□□□ 13.2
YBX3P16989 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.231e-6■■□□□ 13.2
YBX3P16989 ANAPC5-209ENST00000535641 2627 ntTSL 214.6□□□□□ -0.071e-6■■□□□ 13.2
YBX3P16989 ANAPC5-218ENST00000541887 2400 ntTSL 5 BASIC12.99□□□□□ -0.331e-6■■□□□ 13.2
YBX3P16989 ANAPC5-214ENST00000539079 1715 ntTSL 1 (best)12.04□□□□□ -0.481e-6■■□□□ 13.2
YBX3P16989 ANAPC5-205ENST00000534976 3165 ntTSL 510.17□□□□□ -0.781e-6■■□□□ 13.2
YBX3P16989 ANAPC5-219ENST00000544314 1508 ntTSL 29.83□□□□□ -0.841e-6■■□□□ 13.2
YBX3P16989 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC8.62□□□□□ -1.031e-6■■□□□ 13.2
YBX3P16989 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.062e-6■■□□□ 13.2
YBX3P16989 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.152e-6■■□□□ 13.2
YBX3P16989 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.152e-6■■□□□ 13.2
YBX3P16989 SRRT-213ENST00000611405 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.392e-6■■□□□ 13.2
YBX3P16989 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.534e-11■■□□□ 13.2
YBX3P16989 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.99■□□□□ 0.473e-14■■□□□ 13.2
YBX3P16989 RIC8A-214ENST00000531541 376 ntTSL 310.04□□□□□ -0.82e-11■■□□□ 13.2
YBX3P16989 RIC8A-202ENST00000524854 649 ntTSL 39.95□□□□□ -0.822e-11■■□□□ 13.2
YBX3P16989 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.114e-7■■□□□ 13.2
YBX3P16989 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.64e-7■■□□□ 13.2
YBX3P16989 MLEC-203ENST00000535413 617 ntTSL 213.98□□□□□ -0.173e-8■■□□□ 13.2
YBX3P16989 PHF19-213ENST00000487555 1092 ntTSL 1 (best)20.32■□□□□ 0.844e-10■■□□□ 13.2
YBX3P16989 MCM5-209ENST00000493076 4599 ntTSL 211.56□□□□□ -0.564e-9■■□□□ 13.2
YBX3P16989 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.17e-7■■□□□ 13.2
YBX3P16989 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC9.13□□□□□ -0.957e-7■■□□□ 13.2
YBX3P16989 DLGAP4-214ENST00000491207 469 ntTSL 418.06■□□□□ 0.484e-8■■□□□ 13.2
YBX3P16989 DLGAP4-211ENST00000482037 603 ntTSL 517.9■□□□□ 0.464e-8■■□□□ 13.2
YBX3P16989 DLGAP4-209ENST00000479220 577 ntTSL 316.28■□□□□ 0.24e-8■■□□□ 13.2
YBX3P16989 IGF1R-216ENST00000560972 310 ntTSL 1 (best)14.38□□□□□ -0.111e-7■■□□□ 13.2
YBX3P16989 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.13e-8■■□□□ 13.2
YBX3P16989 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.75□□□□□ -0.053e-8■■□□□ 13.2
YBX3P16989 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC13.07□□□□□ -0.323e-8■■□□□ 13.2
YBX3P16989 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.523e-8■■□□□ 13.2
YBX3P16989 LRRC41-203ENST00000472710 4455 ntTSL 210.6□□□□□ -0.713e-8■■□□□ 13.2
YBX3P16989 ANXA11-204ENST00000437799 610 ntTSL 220.76■□□□□ 0.911e-6■■□□□ 13.2
YBX3P16989 MBTPS1-210ENST00000565863 597 ntTSL 428.22■■■□□ 2.114e-8■■□□□ 13.2
YBX3P16989 MBTPS1-213ENST00000569770 763 ntTSL 327■■□□□ 1.914e-8■■□□□ 13.2
YBX3P16989 MBTPS1-206ENST00000563231 546 ntTSL 512.53□□□□□ -0.44e-8■■□□□ 13.2
YBX3P16989 MBTPS1-203ENST00000562788 431 ntTSL 212.08□□□□□ -0.484e-8■■□□□ 13.2
YBX3P16989 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.114e-8■■□□□ 13.2
YBX3P16989 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.791e-6■■□□□ 13.2
YBX3P16989 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.411e-6■■□□□ 13.2
YBX3P16989 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.021e-6■■□□□ 13.2
YBX3P16989 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.161e-6■■□□□ 13.2
YBX3P16989 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.261e-6■■□□□ 13.2
YBX3P16989 PGK1-204ENST00000477335 353 ntTSL 311.34□□□□□ -0.596e-13■■□□□ 13.2
YBX3P16989 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.32■□□□□ 0.361e-8■■□□□ 13.2
YBX3P16989 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.89■□□□□ 0.291e-8■■□□□ 13.2
YBX3P16989 GAS5-202ENST00000414075 413 ntTSL 2 BASIC7.57□□□□□ -1.21e-25■■□□□ 13.2
YBX3P16989 URI1-211ENST00000575242 1032 ntTSL 215.24■□□□□ 0.033e-6■■□□□ 13.2
YBX3P16989 PKP3-204ENST00000526971 532 ntTSL 226.1■■□□□ 1.773e-9■■□□□ 13.2
YBX3P16989 EYA3-206ENST00000471498 1806 ntTSL 1 (best)11.9□□□□□ -0.59e-9■■□□□ 13.2
YBX3P16989 EYA3-201ENST00000373863 1729 ntTSL 1 (best) BASIC11.51□□□□□ -0.579e-9■■□□□ 13.2
YBX3P16989 EYA3-202ENST00000373864 2459 ntTSL 5 BASIC10.65□□□□□ -0.79e-9■■□□□ 13.2
YBX3P16989 NUP98-220ENST00000533346 580 ntTSL 212.83□□□□□ -0.365e-10■■□□□ 13.2
YBX3P16989 CD81-204ENST00000468153 940 ntTSL 223.5■■□□□ 1.358e-11■■□□□ 13.2
YBX3P16989 BIRC6-209ENST00000471232 4226 ntTSL 26.65□□□□□ -1.353e-6■■□□□ 13.2
Retrieved 100 of 29,075 protein–RNA pairs in 314.2 ms