Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 AL031133.1-201ENST00000406807 723 ntBASIC21.29■■□□□ 1
KRT40Q6A162 AC026396.1-201ENST00000419388 421 ntBASIC21.29■■□□□ 1
KRT40Q6A162 AC117947.1-201ENST00000427448 529 ntBASIC21.29■■□□□ 1
KRT40Q6A162 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.29■■□□□ 1
KRT40Q6A162 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
KRT40Q6A162 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.29■■□□□ 1
KRT40Q6A162 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.29■■□□□ 1
KRT40Q6A162 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.29■■□□□ 1
KRT40Q6A162 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
KRT40Q6A162 AC093677.2-201ENST00000600169 1863 ntBASIC21.28■■□□□ 1
KRT40Q6A162 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.28■■□□□ 1
KRT40Q6A162 HMGA1P5-201ENST00000412453 271 ntBASIC21.28■■□□□ 1
KRT40Q6A162 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 KRT18P48-201ENST00000434763 852 ntBASIC21.28■■□□□ 1
KRT40Q6A162 DUSP5P1-201ENST00000441325 1139 ntBASIC21.28■■□□□ 1
KRT40Q6A162 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.28■■□□□ 1
KRT40Q6A162 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 AC112497.1-201ENST00000624824 639 ntBASIC21.28■■□□□ 1
KRT40Q6A162 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT40Q6A162 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
KRT40Q6A162 SDHAP2-201ENST00000455183 2001 ntBASIC21.28■■□□□ 1
KRT40Q6A162 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.27■■□□□ 1
KRT40Q6A162 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
KRT40Q6A162 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.27■■□□□ 1
KRT40Q6A162 AC009947.2-201ENST00000444014 672 ntBASIC21.27■■□□□ 1
KRT40Q6A162 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.27■■□□□ 1
KRT40Q6A162 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.27■■□□□ 1
KRT40Q6A162 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.27■■□□□ 1
KRT40Q6A162 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
KRT40Q6A162 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.27■■□□□ 1
KRT40Q6A162 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.27■■□□□ 1
KRT40Q6A162 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.27■■□□□ 1
KRT40Q6A162 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.27■■□□□ 1
KRT40Q6A162 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT40Q6A162 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
KRT40Q6A162 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
KRT40Q6A162 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
KRT40Q6A162 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.26■□□□□ 0.99
KRT40Q6A162 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.26■□□□□ 0.99
KRT40Q6A162 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.26■□□□□ 0.99
KRT40Q6A162 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
KRT40Q6A162 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
KRT40Q6A162 BX664615.1-201ENST00000443558 458 ntBASIC21.26■□□□□ 0.99
KRT40Q6A162 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.26■□□□□ 0.99
KRT40Q6A162 AC104390.1-201ENST00000555663 520 ntBASIC21.26■□□□□ 0.99
KRT40Q6A162 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.26■□□□□ 0.99
KRT40Q6A162 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
KRT40Q6A162 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
KRT40Q6A162 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms