Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC14.22□□□□□ -0.13
HOXD3P31249 MIR3917-201ENST00000580971 93 ntBASIC14.22□□□□□ -0.13
HOXD3P31249 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 AC092329.2-201ENST00000598402 547 ntBASIC14.22□□□□□ -0.13
HOXD3P31249 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 KRT18P41-201ENST00000518924 1277 ntBASIC14.21□□□□□ -0.13
HOXD3P31249 AC009065.1-201ENST00000564055 1225 ntBASIC14.21□□□□□ -0.13
HOXD3P31249 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD3P31249 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 NPAP1P7-201ENST00000613027 823 ntBASIC14.21□□□□□ -0.13
HOXD3P31249 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXD3P31249 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD3P31249 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD3P31249 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXD3P31249 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXD3P31249 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD3P31249 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
HOXD3P31249 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD3P31249 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.21□□□□□ -0.14
HOXD3P31249 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD3P31249 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.21□□□□□ -0.14
HOXD3P31249 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXD3P31249 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXD3P31249 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 AC018445.3-201ENST00000624177 1945 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
HOXD3P31249 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD3P31249 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD3P31249 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXD3P31249 TSSC2-201ENST00000450217 709 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 BX276092.5-203ENST00000456199 560 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.2□□□□□ -0.14
HOXD3P31249 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXD3P31249 AC011498.5-201ENST00000592027 486 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD3P31249 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXD3P31249 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXD3P31249 AL157888.1-201ENST00000631930 593 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HOXD3P31249 KRT8P50-201ENST00000562022 1438 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD3P31249 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 NFIC-211ENST00000641145 8399 ntBASIC14.2□□□□□ -0.14
HOXD3P31249 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD3P31249 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD3P31249 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms