Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.28■□□□□ 0.84
TPM1P09493 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TPM1P09493 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
TPM1P09493 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TPM1P09493 AC134043.2-201ENST00000624206 2238 ntBASIC20.27■□□□□ 0.84
TPM1P09493 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.27■□□□□ 0.84
TPM1P09493 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.27■□□□□ 0.84
TPM1P09493 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 KRT17P3-201ENST00000420566 1262 ntBASIC20.27■□□□□ 0.84
TPM1P09493 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
TPM1P09493 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 UNC93B5-201ENST00000530315 699 ntBASIC20.27■□□□□ 0.84
TPM1P09493 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TPM1P09493 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.27■□□□□ 0.84
TPM1P09493 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM1P09493 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
TPM1P09493 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TPM1P09493 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
TPM1P09493 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TPM1P09493 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TPM1P09493 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.27■□□□□ 0.83
TPM1P09493 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TPM1P09493 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.27■□□□□ 0.83
TPM1P09493 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TPM1P09493 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.27■□□□□ 0.83
TPM1P09493 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 AC012313.1-201ENST00000593393 3059 ntBASIC20.26■□□□□ 0.83
TPM1P09493 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 LINC00896-202ENST00000609602 2128 ntBASIC20.26■□□□□ 0.83
TPM1P09493 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 AC009053.2-201ENST00000563701 2365 ntBASIC20.26■□□□□ 0.83
TPM1P09493 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.26■□□□□ 0.83
TPM1P09493 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.26■□□□□ 0.83
TPM1P09493 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.26■□□□□ 0.83
TPM1P09493 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.26■□□□□ 0.83
TPM1P09493 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.26■□□□□ 0.83
TPM1P09493 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.26■□□□□ 0.83
TPM1P09493 AL109923.1-201ENST00000618799 583 ntBASIC20.26■□□□□ 0.83
TPM1P09493 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TPM1P09493 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
TPM1P09493 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
TPM1P09493 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM1P09493 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.25■□□□□ 0.83
TPM1P09493 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
TPM1P09493 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.25■□□□□ 0.83
TPM1P09493 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.25■□□□□ 0.83
TPM1P09493 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 KRT16P5-201ENST00000455284 522 ntBASIC20.25■□□□□ 0.83
TPM1P09493 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.25■□□□□ 0.83
TPM1P09493 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.25■□□□□ 0.83
TPM1P09493 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.25■□□□□ 0.83
TPM1P09493 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM1P09493 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms