Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
USP1O94782 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.62■□□□□ 0.57
USP1O94782 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.62■□□□□ 0.57
USP1O94782 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP1O94782 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
USP1O94782 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.62■□□□□ 0.57
USP1O94782 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 ESPNP-201ENST00000270691 2015 ntBASIC18.61■□□□□ 0.57
USP1O94782 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
USP1O94782 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 KRT8P50-201ENST00000562022 1438 ntBASIC18.61■□□□□ 0.57
USP1O94782 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
USP1O94782 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
USP1O94782 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.61■□□□□ 0.57
USP1O94782 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.61■□□□□ 0.57
USP1O94782 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.61■□□□□ 0.57
USP1O94782 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 MIR4497-201ENST00000583208 89 ntBASIC18.61■□□□□ 0.57
USP1O94782 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP1O94782 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP1O94782 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.61■□□□□ 0.57
USP1O94782 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP1O94782 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
USP1O94782 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.6■□□□□ 0.57
USP1O94782 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.6■□□□□ 0.57
USP1O94782 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.6■□□□□ 0.57
USP1O94782 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.6■□□□□ 0.57
USP1O94782 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
USP1O94782 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.6■□□□□ 0.57
USP1O94782 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.6■□□□□ 0.57
USP1O94782 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.6■□□□□ 0.57
USP1O94782 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.6■□□□□ 0.57
USP1O94782 MIR4674-201ENST00000582457 87 ntBASIC18.6■□□□□ 0.57
USP1O94782 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.6■□□□□ 0.57
USP1O94782 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.6■□□□□ 0.57
USP1O94782 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP1O94782 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 AC139713.2-201ENST00000641328 2723 ntBASIC18.59■□□□□ 0.57
USP1O94782 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.59■□□□□ 0.57
USP1O94782 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.59■□□□□ 0.57
USP1O94782 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP1O94782 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP1O94782 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.59■□□□□ 0.57
USP1O94782 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
USP1O94782 AP003071.4-201ENST00000562276 1284 ntBASIC18.59■□□□□ 0.57
USP1O94782 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms