Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 AP002414.4-201ENST00000589764 1148 ntBASIC21.08■□□□□ 0.97
SH3RF1Q7Z6J0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.08■□□□□ 0.96
SH3RF1Q7Z6J0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SH3RF1Q7Z6J0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SH3RF1Q7Z6J0 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SH3RF1Q7Z6J0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.08■□□□□ 0.96
SH3RF1Q7Z6J0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 AC126763.1-201ENST00000552015 2118 ntBASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SH3RF1Q7Z6J0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 AL499627.1-201ENST00000569373 2188 ntBASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 AP000593.1-201ENST00000393668 712 ntBASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 NUS1P1-201ENST00000446295 882 ntBASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 AC079781.3-201ENST00000449110 356 ntBASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 AL354751.1-201ENST00000412768 1863 ntBASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SH3RF1Q7Z6J0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms