Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 AL390961.4-201ENST00000623958 2535 ntBASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 AC092597.1-201ENST00000487352 616 ntBASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 AL157888.1-201ENST00000631930 593 ntBASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFWD3Q6PCD5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 HOXB1-202ENST00000577092 1414 ntBASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 AC034232.1-201ENST00000506026 1064 ntBASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 AL358472.4-201ENST00000633140 710 ntBASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.18■□□□□ 0.66
RFWD3Q6PCD5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 AC083849.1-201ENST00000615227 514 ntBASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 LINC01311-201ENST00000565162 1445 ntBASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFWD3Q6PCD5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.16■□□□□ 0.66
RFWD3Q6PCD5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms